miRNA display CGI


Results 41 - 60 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 119769 0.7 0.57838
Target:  5'- gGU-CGCGGCcgGCCuCCAggcggcuCCGGUCCGCCGa -3'
miRNA:   3'- -CAuGUGCCG--CGG-GGU-------GGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 17650 0.7 0.579354
Target:  5'- --cCGCGGcCGCCgCCACCGccgCCACCGc -3'
miRNA:   3'- cauGUGCC-GCGG-GGUGGUca-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 3564 0.69 0.589113
Target:  5'- -gGgGCGGUcaaucGCCCC-CCAGcCCACCGa -3'
miRNA:   3'- caUgUGCCG-----CGGGGuGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 35292 0.69 0.589113
Target:  5'- -gGCGuCGuGCGCCCUcggacggaccGCCAGUUCACCc -3'
miRNA:   3'- caUGU-GC-CGCGGGG----------UGGUCAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 184523 0.69 0.589113
Target:  5'- -cGCGCGGCGCgggcgacgccgCCCACCg--CCGCCu -3'
miRNA:   3'- caUGUGCCGCG-----------GGGUGGucaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 107066 0.69 0.589113
Target:  5'- -gGCGCGGCGCCgCCGgCAuGUCggaGCCGa -3'
miRNA:   3'- caUGUGCCGCGG-GGUgGU-CAGg--UGGU- -5'
10704 3' -60.1 NC_002794.1 + 190510 0.69 0.597921
Target:  5'- --cCACGGCGUgCCCAgCCGcgugccgaucgucGUCCACCAg -3'
miRNA:   3'- cauGUGCCGCG-GGGU-GGU-------------CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 31387 0.69 0.598901
Target:  5'- cGU-CGuCGGCgGCCCCGCCGcGcCCGCCGc -3'
miRNA:   3'- -CAuGU-GCCG-CGGGGUGGU-CaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 96182 0.69 0.608711
Target:  5'- gGUGCAcCGGCGCCugCCgGCCgAGUCCcuGCCGg -3'
miRNA:   3'- -CAUGU-GCCGCGG--GG-UGG-UCAGG--UGGU- -5'
10704 3' -60.1 NC_002794.1 + 121368 0.69 0.608711
Target:  5'- ---gACGGCGUCCgaGCCGG-CCGCCGc -3'
miRNA:   3'- caugUGCCGCGGGg-UGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 151687 0.69 0.608711
Target:  5'- gGUAcUugGGuCGCCCCGCCGGccgagCgCGCCAg -3'
miRNA:   3'- -CAU-GugCC-GCGGGGUGGUCa----G-GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 119930 0.69 0.608711
Target:  5'- -cGCACGGCGCCgaUCuCCAGcCgCGCCAg -3'
miRNA:   3'- caUGUGCCGCGG--GGuGGUCaG-GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 115928 0.69 0.618538
Target:  5'- -gGCGCGGCGgCggGCCGGcCCGCCGc -3'
miRNA:   3'- caUGUGCCGCgGggUGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 183006 0.69 0.618538
Target:  5'- --cCGCgGGCGCCCCGCgCGcGcCCGCCGc -3'
miRNA:   3'- cauGUG-CCGCGGGGUG-GU-CaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 19468 0.69 0.618538
Target:  5'- -gGCgGCGGCGggaCCCGCCGGUCgcccgCACCGa -3'
miRNA:   3'- caUG-UGCCGCg--GGGUGGUCAG-----GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 181742 0.69 0.618538
Target:  5'- -cGCGCGaGCGgCCgGCCAGcCCGCUg -3'
miRNA:   3'- caUGUGC-CGCgGGgUGGUCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 49433 0.69 0.618538
Target:  5'- cGU-CACGGCGUCCgGCgCGGUCguCGCCGu -3'
miRNA:   3'- -CAuGUGCCGCGGGgUG-GUCAG--GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 93458 0.69 0.628374
Target:  5'- ---gACGGCGUCCCGCCgccgcacguGG-CCACCu -3'
miRNA:   3'- caugUGCCGCGGGGUGG---------UCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 113189 0.69 0.628374
Target:  5'- -cGCGgaGGCGCCuCCGCCGccgCCACCGc -3'
miRNA:   3'- caUGUg-CCGCGG-GGUGGUca-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 112216 0.69 0.628374
Target:  5'- -aGCACGGCccGCUCCAgggcguCCAGggCCGCCGc -3'
miRNA:   3'- caUGUGCCG--CGGGGU------GGUCa-GGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.