miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 80842 0.69 0.628374
Target:  5'- -gGCGCGGaCGCCnCCACCuaccccGUCUACUu -3'
miRNA:   3'- caUGUGCC-GCGG-GGUGGu-----CAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 86844 0.69 0.637229
Target:  5'- -gGguCGGCgGCCCCGCCgggauugGGUCUGCCGc -3'
miRNA:   3'- caUguGCCG-CGGGGUGG-------UCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 69063 0.69 0.638213
Target:  5'- --cCACGG-GCCgCCGCCGG-CCGCCc -3'
miRNA:   3'- cauGUGCCgCGG-GGUGGUCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 186346 0.69 0.638213
Target:  5'- -gGCgGCGGCgacguGCCCgACCAG-CCGCCGc -3'
miRNA:   3'- caUG-UGCCG-----CGGGgUGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 152558 0.68 0.648047
Target:  5'- aGUGCcaggaGCGGCGCUUCACCGccgcGgcggCCGCCAc -3'
miRNA:   3'- -CAUG-----UGCCGCGGGGUGGU----Ca---GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 124391 0.68 0.654925
Target:  5'- -cGCgGCGGCGCgUCGCCGgucgucggggcgccGUCCGCCGc -3'
miRNA:   3'- caUG-UGCCGCGgGGUGGU--------------CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 23570 0.68 0.65787
Target:  5'- -gGCcCGGUGCCgCCGCCAc-CCGCCGa -3'
miRNA:   3'- caUGuGCCGCGG-GGUGGUcaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 48060 0.68 0.65787
Target:  5'- -gGCACGGCGCugauggCCgGCCAGcgggagcagCCGCCGc -3'
miRNA:   3'- caUGUGCCGCG------GGgUGGUCa--------GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 41201 0.68 0.667674
Target:  5'- cGU-CACGGCGCUgcugCCACCGG-CCuCCGg -3'
miRNA:   3'- -CAuGUGCCGCGG----GGUGGUCaGGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 27489 0.68 0.667674
Target:  5'- -cGCGCcGagGCCgCGCCAGUCCAUCAu -3'
miRNA:   3'- caUGUGcCg-CGGgGUGGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 54999 0.68 0.667674
Target:  5'- ---gGCGGCGaCUCGCCGggcGUCCGCCGc -3'
miRNA:   3'- caugUGCCGCgGGGUGGU---CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 122661 0.68 0.667674
Target:  5'- cUGCugGCGGCGCaggCCCggcuguGCCGGUCgCGCCAg -3'
miRNA:   3'- cAUG--UGCCGCG---GGG------UGGUCAG-GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 56588 0.68 0.667674
Target:  5'- --cCGCGGCGCCcgCCGCCGG-CCuCCu -3'
miRNA:   3'- cauGUGCCGCGG--GGUGGUCaGGuGGu -5'
10704 3' -60.1 NC_002794.1 + 105661 0.68 0.667674
Target:  5'- --cCGCGGCGCgCuCCGCCcGGaCCGCCGg -3'
miRNA:   3'- cauGUGCCGCG-G-GGUGG-UCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 115058 0.68 0.667674
Target:  5'- -cGgGCGGCaGCgCCGuCCAGUCCACg- -3'
miRNA:   3'- caUgUGCCG-CGgGGU-GGUCAGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 60881 0.68 0.676475
Target:  5'- aGUACAuCGGCGCcguggucCCCAucCCGuUCCGCCAc -3'
miRNA:   3'- -CAUGU-GCCGCG-------GGGU--GGUcAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 72452 0.68 0.687193
Target:  5'- ---gGCGGCGCCCCGcgcCCGG-CC-CCGc -3'
miRNA:   3'- caugUGCCGCGGGGU---GGUCaGGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 127228 0.68 0.687193
Target:  5'- -aGCA-GGCGCCCCGCUAcaCgGCCAc -3'
miRNA:   3'- caUGUgCCGCGGGGUGGUcaGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 145536 0.68 0.687193
Target:  5'- -aGCGCcucgGGCGCCCCgagcggcccgACCGGUUCGCgGa -3'
miRNA:   3'- caUGUG----CCGCGGGG----------UGGUCAGGUGgU- -5'
10704 3' -60.1 NC_002794.1 + 183920 0.68 0.687193
Target:  5'- -gACACGGU-CCCCGgCAGggucaCCGCCAc -3'
miRNA:   3'- caUGUGCCGcGGGGUgGUCa----GGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.