miRNA display CGI


Results 81 - 100 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 83109 0.68 0.69205
Target:  5'- -gGCACGGauuaucugcucaaGCUCCGCCAGUacuucgaCCGCCu -3'
miRNA:   3'- caUGUGCCg------------CGGGGUGGUCA-------GGUGGu -5'
10704 3' -60.1 NC_002794.1 + 154344 0.68 0.696894
Target:  5'- gGUGcCGCGGCcgaGCuCCCGCgCGGUCCagGCCGc -3'
miRNA:   3'- -CAU-GUGCCG---CG-GGGUG-GUCAGG--UGGU- -5'
10704 3' -60.1 NC_002794.1 + 184186 0.68 0.696894
Target:  5'- --cCGCGGCGCCCgGCgAGgcCCGCUc -3'
miRNA:   3'- cauGUGCCGCGGGgUGgUCa-GGUGGu -5'
10704 3' -60.1 NC_002794.1 + 183994 0.68 0.696894
Target:  5'- ---nACcGCGCCcgCCACCGuGUCCACCAu -3'
miRNA:   3'- caugUGcCGCGG--GGUGGU-CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 183459 0.68 0.696894
Target:  5'- -cGC-CGGCGCccgCCCGCCgcgAGUCCGCg- -3'
miRNA:   3'- caUGuGCCGCG---GGGUGG---UCAGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 182058 0.68 0.696894
Target:  5'- cUGCGCguagGGCGCCUgCGuCCGGUCgGCCAc -3'
miRNA:   3'- cAUGUG----CCGCGGG-GU-GGUCAGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 180623 0.68 0.696894
Target:  5'- -gACACGGCGgCCCACCcGcgcUCCagacgacgaGCCAg -3'
miRNA:   3'- caUGUGCCGCgGGGUGGuC---AGG---------UGGU- -5'
10704 3' -60.1 NC_002794.1 + 78705 0.68 0.696894
Target:  5'- -gACACGGCGCC--GCCAGaaacUgCACCAg -3'
miRNA:   3'- caUGUGCCGCGGggUGGUC----AgGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 10835 0.68 0.696894
Target:  5'- -gAgACGGCGCCCUGCUcGUCaCGCUc -3'
miRNA:   3'- caUgUGCCGCGGGGUGGuCAG-GUGGu -5'
10704 3' -60.1 NC_002794.1 + 93037 0.68 0.696894
Target:  5'- gGUGCGCGGCuGCCUgGCCu-UCCugCu -3'
miRNA:   3'- -CAUGUGCCG-CGGGgUGGucAGGugGu -5'
10704 3' -60.1 NC_002794.1 + 37115 0.67 0.706545
Target:  5'- cGU-CACGGCGaagaCCCG-CAGcUCCGCCGg -3'
miRNA:   3'- -CAuGUGCCGCg---GGGUgGUC-AGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 81549 0.67 0.716137
Target:  5'- cUGgACGGCuGCCgCCGCCGccgCCGCCGc -3'
miRNA:   3'- cAUgUGCCG-CGG-GGUGGUca-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 116998 0.67 0.716137
Target:  5'- cGUcCGCGGCGUCUCGCCcaGGUaCCAgCCGc -3'
miRNA:   3'- -CAuGUGCCGCGGGGUGG--UCA-GGU-GGU- -5'
10704 3' -60.1 NC_002794.1 + 15216 0.67 0.716137
Target:  5'- ---gGCGGCGUCCC-CC-GUCCGCgGg -3'
miRNA:   3'- caugUGCCGCGGGGuGGuCAGGUGgU- -5'
10704 3' -60.1 NC_002794.1 + 143097 0.67 0.724713
Target:  5'- uUGCGCGGCguguuccaGCCCCGCUcggccguggcgcaGGUCUcggGCCAc -3'
miRNA:   3'- cAUGUGCCG--------CGGGGUGG-------------UCAGG---UGGU- -5'
10704 3' -60.1 NC_002794.1 + 90224 0.67 0.725662
Target:  5'- -nGCGcCGGaGCCCCGCCuguGGUCC-CCGc -3'
miRNA:   3'- caUGU-GCCgCGGGGUGG---UCAGGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 193939 0.67 0.725662
Target:  5'- -cGC-CGGCuccgGCCCCGCCg--CCACCGc -3'
miRNA:   3'- caUGuGCCG----CGGGGUGGucaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 93389 0.67 0.725662
Target:  5'- cUGCugGcCGCCUCGCCcaAGUUCGCCu -3'
miRNA:   3'- cAUGugCcGCGGGGUGG--UCAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 89980 0.67 0.725662
Target:  5'- gGUGCGcCGGCGUUCgACCGGUgCGCaCGa -3'
miRNA:   3'- -CAUGU-GCCGCGGGgUGGUCAgGUG-GU- -5'
10704 3' -60.1 NC_002794.1 + 42190 0.67 0.735114
Target:  5'- -cACGauCGGCcgaaacucGCCgCCGCCGGUCUGCCGc -3'
miRNA:   3'- caUGU--GCCG--------CGG-GGUGGUCAGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.