miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 60881 0.68 0.676475
Target:  5'- aGUACAuCGGCGCcguggucCCCAucCCGuUCCGCCAc -3'
miRNA:   3'- -CAUGU-GCCGCG-------GGGU--GGUcAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 62496 0.66 0.780967
Target:  5'- aGUGgACGGCgggcgGCgCCGCCGGcgccUCCGCCc -3'
miRNA:   3'- -CAUgUGCCG-----CGgGGUGGUC----AGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 63704 0.74 0.3508
Target:  5'- -gACgACGGCGCCggcgCCGCCGGaCCGCCGa -3'
miRNA:   3'- caUG-UGCCGCGG----GGUGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 64387 0.67 0.735114
Target:  5'- cUGCGCcucCGCCCCgGCCAGagggCCACCGu -3'
miRNA:   3'- cAUGUGcc-GCGGGG-UGGUCa---GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 65381 0.71 0.493742
Target:  5'- -cACACGGCGCCCCcucacCCGGuuUCCGuCCc -3'
miRNA:   3'- caUGUGCCGCGGGGu----GGUC--AGGU-GGu -5'
10704 3' -60.1 NC_002794.1 + 66705 0.72 0.431347
Target:  5'- cGUACGCcGCGCCCgGCaCGG-CCGCCGc -3'
miRNA:   3'- -CAUGUGcCGCGGGgUG-GUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 68239 0.66 0.798501
Target:  5'- -gACGCaGCGCCCCgACCucccccUCCugCAg -3'
miRNA:   3'- caUGUGcCGCGGGG-UGGuc----AGGugGU- -5'
10704 3' -60.1 NC_002794.1 + 68426 0.72 0.431347
Target:  5'- -gGCACGGUGgCCCACCAccgcugguUCCGCCu -3'
miRNA:   3'- caUGUGCCGCgGGGUGGUc-------AGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 69026 0.7 0.559947
Target:  5'- -gACGcCGGCGCCCuCGCCGGcuuccucgcUCCGCUc -3'
miRNA:   3'- caUGU-GCCGCGGG-GUGGUC---------AGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 69063 0.69 0.638213
Target:  5'- --cCACGG-GCCgCCGCCGG-CCGCCc -3'
miRNA:   3'- cauGUGCCgCGG-GGUGGUCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 69824 0.7 0.56963
Target:  5'- -gAC-CGGCGUCCgC-CCGGUCCGCUg -3'
miRNA:   3'- caUGuGCCGCGGG-GuGGUCAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 70702 0.67 0.754683
Target:  5'- -cGCugGGgGUCCCACCcacugcgaacgcucUCCGCCAc -3'
miRNA:   3'- caUGugCCgCGGGGUGGuc------------AGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 71316 0.66 0.793297
Target:  5'- -gGCgGCGaGCGCgCCACCucggcggcgaugucGUCCGCCAg -3'
miRNA:   3'- caUG-UGC-CGCGgGGUGGu-------------CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 71961 0.66 0.780077
Target:  5'- cGUAC-CGGCGCaucaGCCGGUCCcggcggaGCCGg -3'
miRNA:   3'- -CAUGuGCCGCGggg-UGGUCAGG-------UGGU- -5'
10704 3' -60.1 NC_002794.1 + 72452 0.68 0.687193
Target:  5'- ---gGCGGCGCCCCGcgcCCGG-CC-CCGc -3'
miRNA:   3'- caugUGCCGCGGGGU---GGUCaGGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 74011 0.66 0.807064
Target:  5'- -cACGCuGCGCCUguUCGG-CCGCCAc -3'
miRNA:   3'- caUGUGcCGCGGGguGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 75293 0.7 0.56963
Target:  5'- -gGC-CGGCGCCUCGCCAG-CCGaCAu -3'
miRNA:   3'- caUGuGCCGCGGGGUGGUCaGGUgGU- -5'
10704 3' -60.1 NC_002794.1 + 75472 0.74 0.35381
Target:  5'- cGUAcCACGGCGCcgagacggCCCgcguacgagccggcaACCAGUCCGCCGc -3'
miRNA:   3'- -CAU-GUGCCGCG--------GGG---------------UGGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 76454 0.67 0.74355
Target:  5'- --cCGUGGCGCCcgccccuCCACC-GUCCGCCGg -3'
miRNA:   3'- cauGUGCCGCGG-------GGUGGuCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 78108 0.67 0.753761
Target:  5'- -aACGCGGCGgCgCCuCCAGacgCCGCCc -3'
miRNA:   3'- caUGUGCCGCgG-GGuGGUCa--GGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.