Results 81 - 100 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10704 | 3' | -60.1 | NC_002794.1 | + | 105661 | 0.68 | 0.667674 |
Target: 5'- --cCGCGGCGCgCuCCGCCcGGaCCGCCGg -3' miRNA: 3'- cauGUGCCGCG-G-GGUGG-UCaGGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 105911 | 0.67 | 0.744483 |
Target: 5'- -gGCgGCGGCGCUaCCGCCg--CCGCCGg -3' miRNA: 3'- caUG-UGCCGCGG-GGUGGucaGGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 107066 | 0.69 | 0.589113 |
Target: 5'- -gGCGCGGCGCCgCCGgCAuGUCggaGCCGa -3' miRNA: 3'- caUGUGCCGCGG-GGUgGU-CAGg--UGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 107147 | 0.71 | 0.493742 |
Target: 5'- -gACGuCGGCGCCCCcgGCgAGggCCGCCGc -3' miRNA: 3'- caUGU-GCCGCGGGG--UGgUCa-GGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 107176 | 0.66 | 0.761112 |
Target: 5'- cUACGCGGCggagccggcgccGCCgCCGCCGGccucgcccggcgCCGCCGg -3' miRNA: 3'- cAUGUGCCG------------CGG-GGUGGUCa-----------GGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 107259 | 0.66 | 0.780967 |
Target: 5'- -gGCcCGGCggaGCCgCGCC-GUCCGCCGc -3' miRNA: 3'- caUGuGCCG---CGGgGUGGuCAGGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 112216 | 0.69 | 0.628374 |
Target: 5'- -aGCACGGCccGCUCCAgggcguCCAGggCCGCCGc -3' miRNA: 3'- caUGUGCCG--CGGGGU------GGUCa-GGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 113189 | 0.69 | 0.628374 |
Target: 5'- -cGCGgaGGCGCCuCCGCCGccgCCACCGc -3' miRNA: 3'- caUGUg-CCGCGG-GGUGGUca-GGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 113673 | 0.66 | 0.772011 |
Target: 5'- -aGCGCGGCGagcaggCCCGCCAccGUCggcagCGCCAg -3' miRNA: 3'- caUGUGCCGCg-----GGGUGGU--CAG-----GUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 115058 | 0.68 | 0.667674 |
Target: 5'- -cGgGCGGCaGCgCCGuCCAGUCCACg- -3' miRNA: 3'- caUgUGCCG-CGgGGU-GGUCAGGUGgu -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 115928 | 0.69 | 0.618538 |
Target: 5'- -gGCGCGGCGgCggGCCGGcCCGCCGc -3' miRNA: 3'- caUGUGCCGCgGggUGGUCaGGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 116891 | 0.66 | 0.798501 |
Target: 5'- -gGCGcCGGCGCCgUcuccggcgGCCGGUCCGgCGu -3' miRNA: 3'- caUGU-GCCGCGGgG--------UGGUCAGGUgGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 116998 | 0.67 | 0.716137 |
Target: 5'- cGUcCGCGGCGUCUCGCCcaGGUaCCAgCCGc -3' miRNA: 3'- -CAuGUGCCGCGGGGUGG--UCA-GGU-GGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 119769 | 0.7 | 0.57838 |
Target: 5'- gGU-CGCGGCcgGCCuCCAggcggcuCCGGUCCGCCGa -3' miRNA: 3'- -CAuGUGCCG--CGG-GGU-------GGUCAGGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 119930 | 0.69 | 0.608711 |
Target: 5'- -cGCACGGCGCCgaUCuCCAGcCgCGCCAg -3' miRNA: 3'- caUGUGCCGCGG--GGuGGUCaG-GUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 121368 | 0.69 | 0.608711 |
Target: 5'- ---gACGGCGUCCgaGCCGG-CCGCCGc -3' miRNA: 3'- caugUGCCGCGGGg-UGGUCaGGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 122661 | 0.68 | 0.667674 |
Target: 5'- cUGCugGCGGCGCaggCCCggcuguGCCGGUCgCGCCAg -3' miRNA: 3'- cAUG--UGCCGCG---GGG------UGGUCAG-GUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 124391 | 0.68 | 0.654925 |
Target: 5'- -cGCgGCGGCGCgUCGCCGgucgucggggcgccGUCCGCCGc -3' miRNA: 3'- caUG-UGCCGCGgGGUGGU--------------CAGGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 127228 | 0.68 | 0.687193 |
Target: 5'- -aGCA-GGCGCCCCGCUAcaCgGCCAc -3' miRNA: 3'- caUGUgCCGCGGGGUGGUcaGgUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 128448 | 0.73 | 0.41187 |
Target: 5'- -cGCACGGCGCCUCcggagcccaggacgACCGGU-CACCGg -3' miRNA: 3'- caUGUGCCGCGGGG--------------UGGUCAgGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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