miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 183994 0.68 0.696894
Target:  5'- ---nACcGCGCCcgCCACCGuGUCCACCAu -3'
miRNA:   3'- caugUGcCGCGG--GGUGGU-CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 183970 0.8 0.155844
Target:  5'- -cACGCuGCGCUCCACCGcGUCCGCCAc -3'
miRNA:   3'- caUGUGcCGCGGGGUGGU-CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 183920 0.68 0.687193
Target:  5'- -gACACGGU-CCCCGgCAGggucaCCGCCAc -3'
miRNA:   3'- caUGUGCCGcGGGGUgGUCa----GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 183459 0.68 0.696894
Target:  5'- -cGC-CGGCGCccgCCCGCCgcgAGUCCGCg- -3'
miRNA:   3'- caUGuGCCGCG---GGGUGG---UCAGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 183246 0.7 0.557051
Target:  5'- -cACGCGGCGgCCCGCCacucGGUacaguacagccagcCCACCGc -3'
miRNA:   3'- caUGUGCCGCgGGGUGG----UCA--------------GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 183006 0.69 0.618538
Target:  5'- --cCGCgGGCGCCCCGCgCGcGcCCGCCGc -3'
miRNA:   3'- cauGUG-CCGCGGGGUG-GU-CaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 182753 0.7 0.55031
Target:  5'- -gACGCGGUacagguagcaGCCgCAcgcCCGGUCCACCAc -3'
miRNA:   3'- caUGUGCCG----------CGGgGU---GGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 182469 0.66 0.798501
Target:  5'- gGUGCGCGGCGUCagCAgauaCAGUCCcaagggGCCGg -3'
miRNA:   3'- -CAUGUGCCGCGGg-GUg---GUCAGG------UGGU- -5'
10704 3' -60.1 NC_002794.1 + 182371 0.66 0.807064
Target:  5'- -cGCACG--GCCCC-CCGGUCCcCCGc -3'
miRNA:   3'- caUGUGCcgCGGGGuGGUCAGGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 182058 0.68 0.696894
Target:  5'- cUGCGCguagGGCGCCUgCGuCCGGUCgGCCAc -3'
miRNA:   3'- cAUGUG----CCGCGGG-GU-GGUCAGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 181742 0.69 0.618538
Target:  5'- -cGCGCGaGCGgCCgGCCAGcCCGCUg -3'
miRNA:   3'- caUGUGC-CGCgGGgUGGUCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 180623 0.68 0.696894
Target:  5'- -gACACGGCGgCCCACCcGcgcUCCagacgacgaGCCAg -3'
miRNA:   3'- caUGUGCCGCgGGGUGGuC---AGG---------UGGU- -5'
10704 3' -60.1 NC_002794.1 + 157310 0.67 0.738872
Target:  5'- -cACGCGGCGCUCgaagacgaagacgcgCGuCCGGUCgACCGg -3'
miRNA:   3'- caUGUGCCGCGGG---------------GU-GGUCAGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 154344 0.68 0.696894
Target:  5'- gGUGcCGCGGCcgaGCuCCCGCgCGGUCCagGCCGc -3'
miRNA:   3'- -CAU-GUGCCG---CG-GGGUG-GUCAGG--UGGU- -5'
10704 3' -60.1 NC_002794.1 + 152558 0.68 0.648047
Target:  5'- aGUGCcaggaGCGGCGCUUCACCGccgcGgcggCCGCCAc -3'
miRNA:   3'- -CAUG-----UGCCGCGGGGUGGU----Ca---GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 151687 0.69 0.608711
Target:  5'- gGUAcUugGGuCGCCCCGCCGGccgagCgCGCCAg -3'
miRNA:   3'- -CAU-GugCC-GCGGGGUGGUCa----G-GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 149252 0.73 0.397829
Target:  5'- gGU-CGCGGCGCCaCCACCcucGUCCccGCCGg -3'
miRNA:   3'- -CAuGUGCCGCGG-GGUGGu--CAGG--UGGU- -5'
10704 3' -60.1 NC_002794.1 + 145536 0.68 0.687193
Target:  5'- -aGCGCcucgGGCGCCCCgagcggcccgACCGGUUCGCgGa -3'
miRNA:   3'- caUGUG----CCGCGGGG----------UGGUCAGGUGgU- -5'
10704 3' -60.1 NC_002794.1 + 145419 0.72 0.466462
Target:  5'- -aGCGCGGCGCgCCGCC-GUCgGCUc -3'
miRNA:   3'- caUGUGCCGCGgGGUGGuCAGgUGGu -5'
10704 3' -60.1 NC_002794.1 + 145138 0.77 0.245434
Target:  5'- cUGCG-GGCGCCCCugUGGUUCACCGg -3'
miRNA:   3'- cAUGUgCCGCGGGGugGUCAGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.