miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 143097 0.67 0.724713
Target:  5'- uUGCGCGGCguguuccaGCCCCGCUcggccguggcgcaGGUCUcggGCCAc -3'
miRNA:   3'- cAUGUGCCG--------CGGGGUGG-------------UCAGG---UGGU- -5'
10704 3' -60.1 NC_002794.1 + 138183 0.66 0.762939
Target:  5'- -gACcuCGGCGgCCaGCCGGUCCACg- -3'
miRNA:   3'- caUGu-GCCGCgGGgUGGUCAGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 131194 0.66 0.772011
Target:  5'- -aGCACGGCGCCggggcggCGCCGGUgUACa- -3'
miRNA:   3'- caUGUGCCGCGGg------GUGGUCAgGUGgu -5'
10704 3' -60.1 NC_002794.1 + 128448 0.73 0.41187
Target:  5'- -cGCACGGCGCCUCcggagcccaggacgACCGGU-CACCGg -3'
miRNA:   3'- caUGUGCCGCGGGG--------------UGGUCAgGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 127228 0.68 0.687193
Target:  5'- -aGCA-GGCGCCCCGCUAcaCgGCCAc -3'
miRNA:   3'- caUGUgCCGCGGGGUGGUcaGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 124391 0.68 0.654925
Target:  5'- -cGCgGCGGCGCgUCGCCGgucgucggggcgccGUCCGCCGc -3'
miRNA:   3'- caUG-UGCCGCGgGGUGGU--------------CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 122661 0.68 0.667674
Target:  5'- cUGCugGCGGCGCaggCCCggcuguGCCGGUCgCGCCAg -3'
miRNA:   3'- cAUG--UGCCGCG---GGG------UGGUCAG-GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 121368 0.69 0.608711
Target:  5'- ---gACGGCGUCCgaGCCGG-CCGCCGc -3'
miRNA:   3'- caugUGCCGCGGGg-UGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 119930 0.69 0.608711
Target:  5'- -cGCACGGCGCCgaUCuCCAGcCgCGCCAg -3'
miRNA:   3'- caUGUGCCGCGG--GGuGGUCaG-GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 119769 0.7 0.57838
Target:  5'- gGU-CGCGGCcgGCCuCCAggcggcuCCGGUCCGCCGa -3'
miRNA:   3'- -CAuGUGCCG--CGG-GGU-------GGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 116998 0.67 0.716137
Target:  5'- cGUcCGCGGCGUCUCGCCcaGGUaCCAgCCGc -3'
miRNA:   3'- -CAuGUGCCGCGGGGUGG--UCA-GGU-GGU- -5'
10704 3' -60.1 NC_002794.1 + 116891 0.66 0.798501
Target:  5'- -gGCGcCGGCGCCgUcuccggcgGCCGGUCCGgCGu -3'
miRNA:   3'- caUGU-GCCGCGGgG--------UGGUCAGGUgGU- -5'
10704 3' -60.1 NC_002794.1 + 115928 0.69 0.618538
Target:  5'- -gGCGCGGCGgCggGCCGGcCCGCCGc -3'
miRNA:   3'- caUGUGCCGCgGggUGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 115058 0.68 0.667674
Target:  5'- -cGgGCGGCaGCgCCGuCCAGUCCACg- -3'
miRNA:   3'- caUgUGCCG-CGgGGU-GGUCAGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 113673 0.66 0.772011
Target:  5'- -aGCGCGGCGagcaggCCCGCCAccGUCggcagCGCCAg -3'
miRNA:   3'- caUGUGCCGCg-----GGGUGGU--CAG-----GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 113189 0.69 0.628374
Target:  5'- -cGCGgaGGCGCCuCCGCCGccgCCACCGc -3'
miRNA:   3'- caUGUg-CCGCGG-GGUGGUca-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 112216 0.69 0.628374
Target:  5'- -aGCACGGCccGCUCCAgggcguCCAGggCCGCCGc -3'
miRNA:   3'- caUGUGCCG--CGGGGU------GGUCa-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 107259 0.66 0.780967
Target:  5'- -gGCcCGGCggaGCCgCGCC-GUCCGCCGc -3'
miRNA:   3'- caUGuGCCG---CGGgGUGGuCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 107176 0.66 0.761112
Target:  5'- cUACGCGGCggagccggcgccGCCgCCGCCGGccucgcccggcgCCGCCGg -3'
miRNA:   3'- cAUGUGCCG------------CGG-GGUGGUCa-----------GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 107147 0.71 0.493742
Target:  5'- -gACGuCGGCGCCCCcgGCgAGggCCGCCGc -3'
miRNA:   3'- caUGU-GCCGCGGGG--UGgUCa-GGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.