miRNA display CGI


Results 61 - 80 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 107066 0.69 0.589113
Target:  5'- -gGCGCGGCGCCgCCGgCAuGUCggaGCCGa -3'
miRNA:   3'- caUGUGCCGCGG-GGUgGU-CAGg--UGGU- -5'
10704 3' -60.1 NC_002794.1 + 105911 0.67 0.744483
Target:  5'- -gGCgGCGGCGCUaCCGCCg--CCGCCGg -3'
miRNA:   3'- caUG-UGCCGCGG-GGUGGucaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 105661 0.68 0.667674
Target:  5'- --cCGCGGCGCgCuCCGCCcGGaCCGCCGg -3'
miRNA:   3'- cauGUGCCGCG-G-GGUGG-UCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 102184 0.66 0.772011
Target:  5'- -cGCGCGGCGaggaCCUGgCGG-CCGCCGu -3'
miRNA:   3'- caUGUGCCGCg---GGGUgGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 96182 0.69 0.608711
Target:  5'- gGUGCAcCGGCGCCugCCgGCCgAGUCCcuGCCGg -3'
miRNA:   3'- -CAUGU-GCCGCGG--GG-UGG-UCAGG--UGGU- -5'
10704 3' -60.1 NC_002794.1 + 93458 0.69 0.628374
Target:  5'- ---gACGGCGUCCCGCCgccgcacguGG-CCACCu -3'
miRNA:   3'- caugUGCCGCGGGGUGG---------UCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 93389 0.67 0.725662
Target:  5'- cUGCugGcCGCCUCGCCcaAGUUCGCCu -3'
miRNA:   3'- cAUGugCcGCGGGGUGG--UCAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 93037 0.68 0.696894
Target:  5'- gGUGCGCGGCuGCCUgGCCu-UCCugCu -3'
miRNA:   3'- -CAUGUGCCG-CGGGgUGGucAGGugGu -5'
10704 3' -60.1 NC_002794.1 + 90224 0.67 0.725662
Target:  5'- -nGCGcCGGaGCCCCGCCuguGGUCC-CCGc -3'
miRNA:   3'- caUGU-GCCgCGGGGUGG---UCAGGuGGU- -5'
10704 3' -60.1 NC_002794.1 + 90198 0.75 0.301104
Target:  5'- -gGCACGGUGCCCgCGCCuccGcCCGCCGc -3'
miRNA:   3'- caUGUGCCGCGGG-GUGGu--CaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 89980 0.67 0.725662
Target:  5'- gGUGCGcCGGCGUUCgACCGGUgCGCaCGa -3'
miRNA:   3'- -CAUGU-GCCGCGGGgUGGUCAgGUG-GU- -5'
10704 3' -60.1 NC_002794.1 + 86844 0.69 0.637229
Target:  5'- -gGguCGGCgGCCCCGCCgggauugGGUCUGCCGc -3'
miRNA:   3'- caUguGCCG-CGGGGUGG-------UCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 85467 0.66 0.798501
Target:  5'- -gGC-CGGCGCCCgGCCuccggccugucGUCUGCCu -3'
miRNA:   3'- caUGuGCCGCGGGgUGGu----------CAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 84185 0.67 0.744483
Target:  5'- -gGCcCGGCGCucggCCCGCCuc-CCACCAc -3'
miRNA:   3'- caUGuGCCGCG----GGGUGGucaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 83894 0.66 0.807064
Target:  5'- -gGCuCGGCGCCCgACgAGcCCGgCAc -3'
miRNA:   3'- caUGuGCCGCGGGgUGgUCaGGUgGU- -5'
10704 3' -60.1 NC_002794.1 + 83770 0.7 0.531196
Target:  5'- cGUACgacgACGaCGCCgCCGCCGcGUCCGCCGu -3'
miRNA:   3'- -CAUG----UGCcGCGG-GGUGGU-CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 83109 0.68 0.69205
Target:  5'- -gGCACGGauuaucugcucaaGCUCCGCCAGUacuucgaCCGCCu -3'
miRNA:   3'- caUGUGCCg------------CGGGGUGGUCA-------GGUGGu -5'
10704 3' -60.1 NC_002794.1 + 82884 0.7 0.56963
Target:  5'- cGUGCGCGccucgcgucCGCCUCGCC-GUCCGCCu -3'
miRNA:   3'- -CAUGUGCc--------GCGGGGUGGuCAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 81549 0.67 0.716137
Target:  5'- cUGgACGGCuGCCgCCGCCGccgCCGCCGc -3'
miRNA:   3'- cAUgUGCCG-CGG-GGUGGUca-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 80842 0.69 0.628374
Target:  5'- -gGCGCGGaCGCCnCCACCuaccccGUCUACUu -3'
miRNA:   3'- caUGUGCC-GCGG-GGUGGu-----CAGGUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.