miRNA display CGI


Results 101 - 120 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 63704 0.74 0.3508
Target:  5'- -gACgACGGCGCCggcgCCGCCGGaCCGCCGa -3'
miRNA:   3'- caUG-UGCCGCGG----GGUGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 62496 0.66 0.780967
Target:  5'- aGUGgACGGCgggcgGCgCCGCCGGcgccUCCGCCc -3'
miRNA:   3'- -CAUgUGCCG-----CGgGGUGGUC----AGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 60881 0.68 0.676475
Target:  5'- aGUACAuCGGCGCcguggucCCCAucCCGuUCCGCCAc -3'
miRNA:   3'- -CAUGU-GCCGCG-------GGGU--GGUcAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 60808 0.66 0.7898
Target:  5'- ---gACGGCGCCcgacaCCACCGuGUUCugCAc -3'
miRNA:   3'- caugUGCCGCGG-----GGUGGU-CAGGugGU- -5'
10704 3' -60.1 NC_002794.1 + 60637 0.66 0.7898
Target:  5'- -gACcCGGCGCCggcggCGCCGG-CCACCc -3'
miRNA:   3'- caUGuGCCGCGGg----GUGGUCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 59885 0.66 0.807064
Target:  5'- cUGCACGGCGCaCCUgcGCCGcGUgCGCa- -3'
miRNA:   3'- cAUGUGCCGCG-GGG--UGGU-CAgGUGgu -5'
10704 3' -60.1 NC_002794.1 + 59535 0.66 0.772011
Target:  5'- -gGCGCuGGCGCacgaguaCCGCCAGUggCACCGc -3'
miRNA:   3'- caUGUG-CCGCGg------GGUGGUCAg-GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 59316 0.67 0.753761
Target:  5'- --cCACGGCGCgCCCgacuucGCCGcccgCCACCAc -3'
miRNA:   3'- cauGUGCCGCG-GGG------UGGUca--GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 58015 0.66 0.762939
Target:  5'- -cGC-CGGgGCCgCCGCCGGcgaacCCGCCGc -3'
miRNA:   3'- caUGuGCCgCGG-GGUGGUCa----GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 57435 0.7 0.531196
Target:  5'- -gGCACGGCGCCCgucauccagCACCuGcUCCACg- -3'
miRNA:   3'- caUGUGCCGCGGG---------GUGGuC-AGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 56928 0.67 0.753761
Target:  5'- cUGC-CGGC-CUCgCACCAGaCCACCAu -3'
miRNA:   3'- cAUGuGCCGcGGG-GUGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 56588 0.68 0.667674
Target:  5'- --cCGCGGCGCCcgCCGCCGG-CCuCCu -3'
miRNA:   3'- cauGUGCCGCGG--GGUGGUCaGGuGGu -5'
10704 3' -60.1 NC_002794.1 + 54999 0.68 0.667674
Target:  5'- ---gGCGGCGaCUCGCCGggcGUCCGCCGc -3'
miRNA:   3'- caugUGCCGCgGGGUGGU---CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 52900 0.78 0.189284
Target:  5'- -aACGCGGCGCCgCCGCCGucgCCGCCGc -3'
miRNA:   3'- caUGUGCCGCGG-GGUGGUca-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 49433 0.69 0.618538
Target:  5'- cGU-CACGGCGUCCgGCgCGGUCguCGCCGu -3'
miRNA:   3'- -CAuGUGCCGCGGGgUG-GUCAG--GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 49260 0.66 0.807064
Target:  5'- -cGCACccacgacgGGCGCUCCAacggcCCGGgcgCCGCCGc -3'
miRNA:   3'- caUGUG--------CCGCGGGGU-----GGUCa--GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 48060 0.68 0.65787
Target:  5'- -gGCACGGCGCugauggCCgGCCAGcgggagcagCCGCCGc -3'
miRNA:   3'- caUGUGCCGCG------GGgUGGUCa--------GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 46587 0.67 0.753761
Target:  5'- -gACAC-GCGaCCCUgaACCuGUCCGCCGc -3'
miRNA:   3'- caUGUGcCGC-GGGG--UGGuCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 43043 0.67 0.735114
Target:  5'- -cGCGCGGCagGCCgaGCCGG-CCACCc -3'
miRNA:   3'- caUGUGCCG--CGGggUGGUCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 42190 0.67 0.735114
Target:  5'- -cACGauCGGCcgaaacucGCCgCCGCCGGUCUGCCGc -3'
miRNA:   3'- caUGU--GCCG--------CGG-GGUGGUCAGGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.