Results 41 - 60 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10704 | 3' | -60.1 | NC_002794.1 | + | 17208 | 0.66 | 0.807064 |
Target: 5'- -gACACcGcCGCCgCCACCAccgCCGCCAc -3' miRNA: 3'- caUGUGcC-GCGG-GGUGGUca-GGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 74011 | 0.66 | 0.807064 |
Target: 5'- -cACGCuGCGCCUguUCGG-CCGCCAc -3' miRNA: 3'- caUGUGcCGCGGGguGGUCaGGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 182371 | 0.66 | 0.807064 |
Target: 5'- -cGCACG--GCCCC-CCGGUCCcCCGc -3' miRNA: 3'- caUGUGCcgCGGGGuGGUCAGGuGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 49260 | 0.66 | 0.807064 |
Target: 5'- -cGCACccacgacgGGCGCUCCAacggcCCGGgcgCCGCCGc -3' miRNA: 3'- caUGUG--------CCGCGGGGU-----GGUCa--GGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 59885 | 0.66 | 0.807064 |
Target: 5'- cUGCACGGCGCaCCUgcGCCGcGUgCGCa- -3' miRNA: 3'- cAUGUGCCGCG-GGG--UGGU-CAgGUGgu -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 71316 | 0.66 | 0.793297 |
Target: 5'- -gGCgGCGaGCGCgCCACCucggcggcgaugucGUCCGCCAg -3' miRNA: 3'- caUG-UGC-CGCGgGGUGGu-------------CAGGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 60808 | 0.66 | 0.7898 |
Target: 5'- ---gACGGCGCCcgacaCCACCGuGUUCugCAc -3' miRNA: 3'- caugUGCCGCGG-----GGUGGU-CAGGugGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 138183 | 0.66 | 0.762939 |
Target: 5'- -gACcuCGGCGgCCaGCCGGUCCACg- -3' miRNA: 3'- caUGu-GCCGCgGGgUGGUCAGGUGgu -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 33782 | 0.66 | 0.771109 |
Target: 5'- -aGCACGacagccuGUGCCgCCACCAGaaguUCUGCCAg -3' miRNA: 3'- caUGUGC-------CGCGG-GGUGGUC----AGGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 102184 | 0.66 | 0.772011 |
Target: 5'- -cGCGCGGCGaggaCCUGgCGG-CCGCCGu -3' miRNA: 3'- caUGUGCCGCg---GGGUgGUCaGGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 131194 | 0.66 | 0.772011 |
Target: 5'- -aGCACGGCGCCggggcggCGCCGGUgUACa- -3' miRNA: 3'- caUGUGCCGCGGg------GUGGUCAgGUGgu -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 59535 | 0.66 | 0.772011 |
Target: 5'- -gGCGCuGGCGCacgaguaCCGCCAGUggCACCGc -3' miRNA: 3'- caUGUG-CCGCGg------GGUGGUCAg-GUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 113673 | 0.66 | 0.772011 |
Target: 5'- -aGCGCGGCGagcaggCCCGCCAccGUCggcagCGCCAg -3' miRNA: 3'- caUGUGCCGCg-----GGGUGGU--CAG-----GUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 71961 | 0.66 | 0.780077 |
Target: 5'- cGUAC-CGGCGCaucaGCCGGUCCcggcggaGCCGg -3' miRNA: 3'- -CAUGuGCCGCGggg-UGGUCAGG-------UGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 62496 | 0.66 | 0.780967 |
Target: 5'- aGUGgACGGCgggcgGCgCCGCCGGcgccUCCGCCc -3' miRNA: 3'- -CAUgUGCCG-----CGgGGUGGUC----AGGUGGu -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 78371 | 0.66 | 0.780967 |
Target: 5'- -aACACGGCcuGCUCCGCCAG-CgACg- -3' miRNA: 3'- caUGUGCCG--CGGGGUGGUCaGgUGgu -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 107259 | 0.66 | 0.780967 |
Target: 5'- -gGCcCGGCggaGCCgCGCC-GUCCGCCGc -3' miRNA: 3'- caUGuGCCG---CGGgGUGGuCAGGUGGU- -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 32304 | 0.66 | 0.780967 |
Target: 5'- --cCGCGGCGgCCgCGCCGG-CCGCg- -3' miRNA: 3'- cauGUGCCGCgGG-GUGGUCaGGUGgu -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 18274 | 0.66 | 0.7898 |
Target: 5'- aUGCGCGGCGCCgaGCCuucgaaccgAG-CCGCCc -3' miRNA: 3'- cAUGUGCCGCGGggUGG---------UCaGGUGGu -5' |
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10704 | 3' | -60.1 | NC_002794.1 | + | 60637 | 0.66 | 0.7898 |
Target: 5'- -gACcCGGCGCCggcggCGCCGG-CCACCc -3' miRNA: 3'- caUGuGCCGCGGg----GUGGUCaGGUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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