miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 107259 0.66 0.780967
Target:  5'- -gGCcCGGCggaGCCgCGCC-GUCCGCCGc -3'
miRNA:   3'- caUGuGCCG---CGGgGUGGuCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 32304 0.66 0.780967
Target:  5'- --cCGCGGCGgCCgCGCCGG-CCGCg- -3'
miRNA:   3'- cauGUGCCGCgGG-GUGGUCaGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 71961 0.66 0.780077
Target:  5'- cGUAC-CGGCGCaucaGCCGGUCCcggcggaGCCGg -3'
miRNA:   3'- -CAUGuGCCGCGggg-UGGUCAGG-------UGGU- -5'
10704 3' -60.1 NC_002794.1 + 102184 0.66 0.772011
Target:  5'- -cGCGCGGCGaggaCCUGgCGG-CCGCCGu -3'
miRNA:   3'- caUGUGCCGCg---GGGUgGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 131194 0.66 0.772011
Target:  5'- -aGCACGGCGCCggggcggCGCCGGUgUACa- -3'
miRNA:   3'- caUGUGCCGCGGg------GUGGUCAgGUGgu -5'
10704 3' -60.1 NC_002794.1 + 59535 0.66 0.772011
Target:  5'- -gGCGCuGGCGCacgaguaCCGCCAGUggCACCGc -3'
miRNA:   3'- caUGUG-CCGCGg------GGUGGUCAg-GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 113673 0.66 0.772011
Target:  5'- -aGCGCGGCGagcaggCCCGCCAccGUCggcagCGCCAg -3'
miRNA:   3'- caUGUGCCGCg-----GGGUGGU--CAG-----GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 33782 0.66 0.771109
Target:  5'- -aGCACGacagccuGUGCCgCCACCAGaaguUCUGCCAg -3'
miRNA:   3'- caUGUGC-------CGCGG-GGUGGUC----AGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 138183 0.66 0.762939
Target:  5'- -gACcuCGGCGgCCaGCCGGUCCACg- -3'
miRNA:   3'- caUGu-GCCGCgGGgUGGUCAGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 58015 0.66 0.762939
Target:  5'- -cGC-CGGgGCCgCCGCCGGcgaacCCGCCGc -3'
miRNA:   3'- caUGuGCCgCGG-GGUGGUCa----GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 107176 0.66 0.761112
Target:  5'- cUACGCGGCggagccggcgccGCCgCCGCCGGccucgcccggcgCCGCCGg -3'
miRNA:   3'- cAUGUGCCG------------CGG-GGUGGUCa-----------GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 70702 0.67 0.754683
Target:  5'- -cGCugGGgGUCCCACCcacugcgaacgcucUCCGCCAc -3'
miRNA:   3'- caUGugCCgCGGGGUGGuc------------AGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 59316 0.67 0.753761
Target:  5'- --cCACGGCGCgCCCgacuucGCCGcccgCCACCAc -3'
miRNA:   3'- cauGUGCCGCG-GGG------UGGUca--GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 78108 0.67 0.753761
Target:  5'- -aACGCGGCGgCgCCuCCAGacgCCGCCc -3'
miRNA:   3'- caUGUGCCGCgG-GGuGGUCa--GGUGGu -5'
10704 3' -60.1 NC_002794.1 + 56928 0.67 0.753761
Target:  5'- cUGC-CGGC-CUCgCACCAGaCCACCAu -3'
miRNA:   3'- cAUGuGCCGcGGG-GUGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 46587 0.67 0.753761
Target:  5'- -gACAC-GCGaCCCUgaACCuGUCCGCCGc -3'
miRNA:   3'- caUGUGcCGC-GGGG--UGGuCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 105911 0.67 0.744483
Target:  5'- -gGCgGCGGCGCUaCCGCCg--CCGCCGg -3'
miRNA:   3'- caUG-UGCCGCGG-GGUGGucaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 84185 0.67 0.744483
Target:  5'- -gGCcCGGCGCucggCCCGCCuc-CCACCAc -3'
miRNA:   3'- caUGuGCCGCG----GGGUGGucaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 76454 0.67 0.74355
Target:  5'- --cCGUGGCGCCcgccccuCCACC-GUCCGCCGg -3'
miRNA:   3'- cauGUGCCGCGG-------GGUGGuCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 157310 0.67 0.738872
Target:  5'- -cACGCGGCGCUCgaagacgaagacgcgCGuCCGGUCgACCGg -3'
miRNA:   3'- caUGUGCCGCGGG---------------GU-GGUCAGgUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.