miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 5' -53.8 NC_002794.1 + 61534 0.66 0.979294
Target:  5'- gGCGGCcgccGCGAAGacgACGccGcCGCGGCGg -3'
miRNA:   3'- aCGCUG----UGCUUUa--UGCa-C-GCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 90814 0.66 0.97907
Target:  5'- gGUGGCguGCGGAcgcccaucagucgGUACGaGgGCGGCGUg -3'
miRNA:   3'- aCGCUG--UGCUU-------------UAUGCaCgCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 88930 0.66 0.979294
Target:  5'- cGCGGUGCGGcg-AUG-GCGCGGUGUa -3'
miRNA:   3'- aCGCUGUGCUuuaUGCaCGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 37272 0.66 0.979294
Target:  5'- gGCgGGCGC-----GCGgGCGCGGCGUa -3'
miRNA:   3'- aCG-CUGUGcuuuaUGCaCGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 101818 0.67 0.968592
Target:  5'- aGCGGCGCGc----CGUGCGCGaggccauGCGg -3'
miRNA:   3'- aCGCUGUGCuuuauGCACGCGC-------CGCa -5'
10704 5' -53.8 NC_002794.1 + 130459 0.67 0.965796
Target:  5'- gGCGGCgaggcgcugGCGGcuUGCGUGCGCgacaugauGGCGc -3'
miRNA:   3'- aCGCUG---------UGCUuuAUGCACGCG--------CCGCa -5'
10704 5' -53.8 NC_002794.1 + 117280 0.67 0.965796
Target:  5'- cGCGACGCccugcGCGgacaGCuGCGGCGUg -3'
miRNA:   3'- aCGCUGUGcuuuaUGCa---CG-CGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 138667 0.67 0.965796
Target:  5'- cUGCgGAUugGuc-UGCGUG-GCGGCGg -3'
miRNA:   3'- -ACG-CUGugCuuuAUGCACgCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 138963 0.67 0.962489
Target:  5'- cUGCGACGCGGcggACGgguugGCcUGGCGg -3'
miRNA:   3'- -ACGCUGUGCUuuaUGCa----CGcGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 179212 0.67 0.965475
Target:  5'- gGCGGCACGAcggacguggcccaGAUGCaacaggucgGCGuCGGCGa -3'
miRNA:   3'- aCGCUGUGCU-------------UUAUGca-------CGC-GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 69508 0.67 0.965796
Target:  5'- cGCG-CACGGucaGGUACG-GCGCGuGCa- -3'
miRNA:   3'- aCGCuGUGCU---UUAUGCaCGCGC-CGca -5'
10704 5' -53.8 NC_002794.1 + 94797 0.67 0.968592
Target:  5'- aGCGGCACGggG-AUGgcaGCGCuacuaccGGCGg -3'
miRNA:   3'- aCGCUGUGCuuUaUGCa--CGCG-------CCGCa -5'
10704 5' -53.8 NC_002794.1 + 94264 0.67 0.968892
Target:  5'- aGCG-CGCGucauuUGCGcgGCGCGGCc- -3'
miRNA:   3'- aCGCuGUGCuuu--AUGCa-CGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 116387 0.67 0.968892
Target:  5'- gUGCGGguCGAAG-ACGaagGUGUGGCGg -3'
miRNA:   3'- -ACGCUguGCUUUaUGCa--CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 63689 0.67 0.968892
Target:  5'- gGCGACgACGAugacgACGacgGCGCcGGCGc -3'
miRNA:   3'- aCGCUG-UGCUuua--UGCa--CGCG-CCGCa -5'
10704 5' -53.8 NC_002794.1 + 90702 0.67 0.968892
Target:  5'- cGCGGCaggACGAAuggugcgACGUGCucGCGGCc- -3'
miRNA:   3'- aCGCUG---UGCUUua-----UGCACG--CGCCGca -5'
10704 5' -53.8 NC_002794.1 + 54045 0.67 0.968892
Target:  5'- cUGCGACcCGucg-ACGUG-GCGGCa- -3'
miRNA:   3'- -ACGCUGuGCuuuaUGCACgCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 91278 0.67 0.968892
Target:  5'- -cCGGCGCGGccuGUACGUGU-CGGCGc -3'
miRNA:   3'- acGCUGUGCUu--UAUGCACGcGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 108181 0.67 0.968892
Target:  5'- cGCGACgcGCGGAcUGCGa--GCGGCGc -3'
miRNA:   3'- aCGCUG--UGCUUuAUGCacgCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 126253 0.67 0.962489
Target:  5'- gGCG-CGCGAGGUcgGCGgcugGCugGCGGCGc -3'
miRNA:   3'- aCGCuGUGCUUUA--UGCa---CG--CGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.