miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 5' -53.8 NC_002794.1 + 130124 0.67 0.962489
Target:  5'- cGCcuUGCGAGAUauuagACGcUGCGCGGCGc -3'
miRNA:   3'- aCGcuGUGCUUUA-----UGC-ACGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 115978 0.67 0.962489
Target:  5'- aGCGGgACGggGaGCG-GCGCcGCGg -3'
miRNA:   3'- aCGCUgUGCuuUaUGCaCGCGcCGCa -5'
10704 5' -53.8 NC_002794.1 + 120061 0.67 0.962489
Target:  5'- gGCGGcCGCGGAGgccgACGcgGCGgUGGCGg -3'
miRNA:   3'- aCGCU-GUGCUUUa---UGCa-CGC-GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 126253 0.67 0.962489
Target:  5'- gGCG-CGCGAGGUcgGCGgcugGCugGCGGCGc -3'
miRNA:   3'- aCGCuGUGCUUUA--UGCa---CG--CGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 138963 0.67 0.962489
Target:  5'- cUGCGACGCGGcggACGgguugGCcUGGCGg -3'
miRNA:   3'- -ACGCUGUGCUuuaUGCa----CGcGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 184467 0.67 0.958965
Target:  5'- cGCGggccGCGCGAAcgGCGcGCGgGGCc- -3'
miRNA:   3'- aCGC----UGUGCUUuaUGCaCGCgCCGca -5'
10704 5' -53.8 NC_002794.1 + 194824 0.67 0.958965
Target:  5'- aGCGACGCGcgcucGCG-GCcCGGCGUc -3'
miRNA:   3'- aCGCUGUGCuuua-UGCaCGcGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 56286 0.67 0.958965
Target:  5'- gGCGGCA-GAgcacGAUGCGcGCGCGGUc- -3'
miRNA:   3'- aCGCUGUgCU----UUAUGCaCGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 100798 0.67 0.958601
Target:  5'- cGCGGCcgcuucuGCGcc-UACGUGCcggGCGGCGg -3'
miRNA:   3'- aCGCUG-------UGCuuuAUGCACG---CGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 179293 0.67 0.955221
Target:  5'- --aGACACGA---GCGgaaCGCGGCGUg -3'
miRNA:   3'- acgCUGUGCUuuaUGCac-GCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 95825 0.67 0.955221
Target:  5'- gGCGGC-CGggGgaGCG-GCGgCGGCGg -3'
miRNA:   3'- aCGCUGuGCuuUa-UGCaCGC-GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 139122 0.67 0.955221
Target:  5'- gGCGAuCACGGAGacgGCGU-CGCGGUa- -3'
miRNA:   3'- aCGCU-GUGCUUUa--UGCAcGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 82017 0.68 0.951251
Target:  5'- cGCuGACGcCGAAAcccgacgaucGCGUGgGCGGCGg -3'
miRNA:   3'- aCG-CUGU-GCUUUa---------UGCACgCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 56040 0.68 0.951251
Target:  5'- aGCGGCA-GAAGaGCGUGgGCaGGUGg -3'
miRNA:   3'- aCGCUGUgCUUUaUGCACgCG-CCGCa -5'
10704 5' -53.8 NC_002794.1 + 71790 0.68 0.951251
Target:  5'- gGCGAguCGccccccgGCGgGCGCGGCGa -3'
miRNA:   3'- aCGCUguGCuuua---UGCaCGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 143077 0.68 0.950842
Target:  5'- gGCGGCAgacguagUGGAGgu--UGCGCGGCGUg -3'
miRNA:   3'- aCGCUGU-------GCUUUaugcACGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 42565 0.68 0.947053
Target:  5'- cGCGACcccgcgGCGGAcccgcggACGgaggaggGCGCGGCGg -3'
miRNA:   3'- aCGCUG------UGCUUua-----UGCa------CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 110246 0.68 0.947053
Target:  5'- cGCGGCG-GAGGUuucccGCGCGGCGUc -3'
miRNA:   3'- aCGCUGUgCUUUAugca-CGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 82872 0.68 0.947053
Target:  5'- cGCGAcCGCGAc---CGUGCGCGccucGCGUc -3'
miRNA:   3'- aCGCU-GUGCUuuauGCACGCGC----CGCA- -5'
10704 5' -53.8 NC_002794.1 + 152544 0.68 0.947053
Target:  5'- gUGCGACuGCGAAGa--GUGCcaggaGCGGCGc -3'
miRNA:   3'- -ACGCUG-UGCUUUaugCACG-----CGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.