Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10705 | 3' | -59.5 | NC_002794.1 | + | 68777 | 0.69 | 0.656537 |
Target: 5'- -cGcCGGAC-GCCCGGCUCuCGCgccCCGg -3' miRNA: 3'- caC-GCCUGuCGGGCUGAG-GCGaa-GGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 70339 | 0.66 | 0.789121 |
Target: 5'- -cGCcGACGGCCgGGCgcCCGCUcgUCCGc -3' miRNA: 3'- caCGcCUGUCGGgCUGa-GGCGA--AGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 75863 | 0.68 | 0.676206 |
Target: 5'- -cGCuGGACGGUCCGcgUCCGCUugacgUCCAc -3' miRNA: 3'- caCG-CCUGUCGGGCugAGGCGA-----AGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 81962 | 0.66 | 0.823246 |
Target: 5'- -cGCGG-C-GCCCG-C-CCGCUUCCc -3' miRNA: 3'- caCGCCuGuCGGGCuGaGGCGAAGGu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 82147 | 0.67 | 0.743567 |
Target: 5'- -gGCGGACacccGGCCCGacgGCUCCgGCgcCCGa -3' miRNA: 3'- caCGCCUG----UCGGGC---UGAGG-CGaaGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 83879 | 0.68 | 0.695741 |
Target: 5'- -gGCGcGACGGCCCcgGGCUCgGCgcCCGa -3' miRNA: 3'- caCGC-CUGUCGGG--CUGAGgCGaaGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 85422 | 0.66 | 0.806478 |
Target: 5'- --aCGGACAcGCCCGAC-CCaagaGCUUCUg -3' miRNA: 3'- cacGCCUGU-CGGGCUGaGG----CGAAGGu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 90946 | 0.67 | 0.743567 |
Target: 5'- -gGCGGGCugugcgccgaGGCCCgGGC-CCGCUUCg- -3' miRNA: 3'- caCGCCUG----------UCGGG-CUGaGGCGAAGgu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 92108 | 0.73 | 0.429324 |
Target: 5'- cGUGCGGAuuCAGaCCCGGCUgccgCCGCUgcCCAa -3' miRNA: 3'- -CACGCCU--GUC-GGGCUGA----GGCGAa-GGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 100247 | 0.67 | 0.73415 |
Target: 5'- -gGCGu-CAGCCCgcuGAC-CCGCUUCCu -3' miRNA: 3'- caCGCcuGUCGGG---CUGaGGCGAAGGu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 100818 | 0.67 | 0.771238 |
Target: 5'- cGUGcCGGGCGGCgggggCCGGCagCCggGCUUCCGc -3' miRNA: 3'- -CAC-GCCUGUCG-----GGCUGa-GG--CGAAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 101527 | 0.67 | 0.73415 |
Target: 5'- -gGCGGGguGCCCGGCgCCaCgUUCCGa -3' miRNA: 3'- caCGCCUguCGGGCUGaGGcG-AAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 104483 | 0.7 | 0.567949 |
Target: 5'- aUGCGGGCGGCCaCGGCggCCGggUCgGg -3' miRNA: 3'- cACGCCUGUCGG-GCUGa-GGCgaAGgU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 104763 | 0.68 | 0.705438 |
Target: 5'- -aGCGGuCGGCCCGccggcGCUCCGacacgCCGa -3' miRNA: 3'- caCGCCuGUCGGGC-----UGAGGCgaa--GGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 107250 | 0.77 | 0.232362 |
Target: 5'- -cGCGGACcuGGCCCGGCggagCCGCgccgUCCGc -3' miRNA: 3'- caCGCCUG--UCGGGCUGa---GGCGa---AGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 112211 | 0.66 | 0.823246 |
Target: 5'- -cGUGGAgcaCGGCCCG-CUCCaggGCgUCCAg -3' miRNA: 3'- caCGCCU---GUCGGGCuGAGG---CGaAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 112290 | 0.68 | 0.685995 |
Target: 5'- cGUGuCGGGCGGCCCcccGGgUCCGaCUUCg- -3' miRNA: 3'- -CAC-GCCUGUCGGG---CUgAGGC-GAAGgu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 116909 | 0.67 | 0.771238 |
Target: 5'- -gGCGGcCGGUCCGGCgUCgGCU-CCGg -3' miRNA: 3'- caCGCCuGUCGGGCUG-AGgCGAaGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 119772 | 0.66 | 0.814939 |
Target: 5'- -cGCGGcCGGCCuccaggCGGCUCCGg-UCCGc -3' miRNA: 3'- caCGCCuGUCGG------GCUGAGGCgaAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 133463 | 0.68 | 0.724651 |
Target: 5'- uUGCGGACggguaugcgGGCgCGACUCUugGCUUUCGc -3' miRNA: 3'- cACGCCUG---------UCGgGCUGAGG--CGAAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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