miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10705 3' -59.5 NC_002794.1 + 134584 0.68 0.724651
Target:  5'- gGUGCuagaGGACcucGGgCCGACUCCGgaUCCc -3'
miRNA:   3'- -CACG----CCUG---UCgGGCUGAGGCgaAGGu -5'
10705 3' -59.5 NC_002794.1 + 137341 0.66 0.814939
Target:  5'- -cGCGGACGGCUCGGCgucgUCGggguCUUCUu -3'
miRNA:   3'- caCGCCUGUCGGGCUGa---GGC----GAAGGu -5'
10705 3' -59.5 NC_002794.1 + 140773 0.75 0.312664
Target:  5'- cUGCGGGCGGCCCGGCagaacaugaUCCGUUacacggucuaUCCGg -3'
miRNA:   3'- cACGCCUGUCGGGCUG---------AGGCGA----------AGGU- -5'
10705 3' -59.5 NC_002794.1 + 145570 0.67 0.762119
Target:  5'- -cGCGGACgAGCgCCGACggagCgGCggCCGg -3'
miRNA:   3'- caCGCCUG-UCG-GGCUGa---GgCGaaGGU- -5'
10705 3' -59.5 NC_002794.1 + 153349 0.66 0.814939
Target:  5'- cGUGUugucaGGACgcGGCCCGGCUgCGCgcCCu -3'
miRNA:   3'- -CACG-----CCUG--UCGGGCUGAgGCGaaGGu -5'
10705 3' -59.5 NC_002794.1 + 180005 0.69 0.617039
Target:  5'- -gGCGGGCccGGCCaCGACgacggCCGCggccgUCCGa -3'
miRNA:   3'- caCGCCUG--UCGG-GCUGa----GGCGa----AGGU- -5'
10705 3' -59.5 NC_002794.1 + 180735 0.68 0.705438
Target:  5'- -cGCGGACGacgccGUCCGGCUCCucggcgGCUUCg- -3'
miRNA:   3'- caCGCCUGU-----CGGGCUGAGG------CGAAGgu -5'
10705 3' -59.5 NC_002794.1 + 186349 0.66 0.789121
Target:  5'- -gGCGGcgACGuGCCCGACcagCCGCcgCCGc -3'
miRNA:   3'- caCGCC--UGU-CGGGCUGa--GGCGaaGGU- -5'
10705 3' -59.5 NC_002794.1 + 186876 0.66 0.789121
Target:  5'- -aGCGGGCucggcucgcGGUCCGGCgUCCGCaggaccaggUUCCGg -3'
miRNA:   3'- caCGCCUG---------UCGGGCUG-AGGCG---------AAGGU- -5'
10705 3' -59.5 NC_002794.1 + 187684 0.67 0.780242
Target:  5'- aUGCGGgucgaGCGGCCCGuuggCCGUcUCCGu -3'
miRNA:   3'- cACGCC-----UGUCGGGCuga-GGCGaAGGU- -5'
10705 3' -59.5 NC_002794.1 + 187824 0.67 0.762119
Target:  5'- -aGCGGAgCGcGCUCGGCUCgGCgcgCCGa -3'
miRNA:   3'- caCGCCU-GU-CGGGCUGAGgCGaa-GGU- -5'
10705 3' -59.5 NC_002794.1 + 190245 1.08 0.002101
Target:  5'- uGUGCGGACAGCCCGACUCCGCUUCCAg -3'
miRNA:   3'- -CACGCCUGUCGGGCUGAGGCGAAGGU- -5'
10705 3' -59.5 NC_002794.1 + 191366 0.66 0.823246
Target:  5'- -cGgGGACGGgCCGGaccCUCCGCgcCCGc -3'
miRNA:   3'- caCgCCUGUCgGGCU---GAGGCGaaGGU- -5'
10705 3' -59.5 NC_002794.1 + 192622 0.79 0.178642
Target:  5'- gGUGCGGACAGUCgGGCggCCGCU-CCAg -3'
miRNA:   3'- -CACGCCUGUCGGgCUGa-GGCGAaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.