Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10705 | 3' | -59.5 | NC_002794.1 | + | 24206 | 0.66 | 0.789121 |
Target: 5'- -aGCGcGGCGGCCCG-CUcacCCGUgUCCGu -3' miRNA: 3'- caCGC-CUGUCGGGCuGA---GGCGaAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 70339 | 0.66 | 0.789121 |
Target: 5'- -cGCcGACGGCCgGGCgcCCGCUcgUCCGc -3' miRNA: 3'- caCGcCUGUCGGgCUGa-GGCGA--AGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 90946 | 0.67 | 0.743567 |
Target: 5'- -gGCGGGCugugcgccgaGGCCCgGGC-CCGCUUCg- -3' miRNA: 3'- caCGCCUG----------UCGGG-CUGaGGCGAAGgu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 82147 | 0.67 | 0.743567 |
Target: 5'- -gGCGGACacccGGCCCGacgGCUCCgGCgcCCGa -3' miRNA: 3'- caCGCCUG----UCGGGC---UGAGG-CGaaGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 8119 | 0.67 | 0.750105 |
Target: 5'- -aGCGGGCGGCggccuccucggugaCCGGCgacggcaCCGCUUCUc -3' miRNA: 3'- caCGCCUGUCG--------------GGCUGa------GGCGAAGGu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 145570 | 0.67 | 0.762119 |
Target: 5'- -cGCGGACgAGCgCCGACggagCgGCggCCGg -3' miRNA: 3'- caCGCCUG-UCG-GGCUGa---GgCGaaGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 187824 | 0.67 | 0.762119 |
Target: 5'- -aGCGGAgCGcGCUCGGCUCgGCgcgCCGa -3' miRNA: 3'- caCGCCU-GU-CGGGCUGAGgCGaa-GGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 100818 | 0.67 | 0.771238 |
Target: 5'- cGUGcCGGGCGGCgggggCCGGCagCCggGCUUCCGc -3' miRNA: 3'- -CAC-GCCUGUCG-----GGCUGa-GG--CGAAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 187684 | 0.67 | 0.780242 |
Target: 5'- aUGCGGgucgaGCGGCCCGuuggCCGUcUCCGu -3' miRNA: 3'- cACGCC-----UGUCGGGCuga-GGCGaAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 116909 | 0.67 | 0.771238 |
Target: 5'- -gGCGGcCGGUCCGGCgUCgGCU-CCGg -3' miRNA: 3'- caCGCCuGUCGGGCUG-AGgCGAaGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 12728 | 0.66 | 0.789121 |
Target: 5'- -cGCGGcgacgAgGGCCCGG-UCCGCUaCCAg -3' miRNA: 3'- caCGCC-----UgUCGGGCUgAGGCGAaGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 186876 | 0.66 | 0.789121 |
Target: 5'- -aGCGGGCucggcucgcGGUCCGGCgUCCGCaggaccaggUUCCGg -3' miRNA: 3'- caCGCCUG---------UCGGGCUG-AGGCG---------AAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 58133 | 0.67 | 0.780242 |
Target: 5'- --cUGGGCGGCCUGGC-CCGCcgCCu -3' miRNA: 3'- cacGCCUGUCGGGCUGaGGCGaaGGu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 81962 | 0.66 | 0.823246 |
Target: 5'- -cGCGG-C-GCCCG-C-CCGCUUCCc -3' miRNA: 3'- caCGCCuGuCGGGCuGaGGCGAAGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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