miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10705 3' -59.5 NC_002794.1 + 190245 1.08 0.002101
Target:  5'- uGUGCGGACAGCCCGACUCCGCUUCCAg -3'
miRNA:   3'- -CACGCCUGUCGGGCUGAGGCGAAGGU- -5'
10705 3' -59.5 NC_002794.1 + 192622 0.79 0.178642
Target:  5'- gGUGCGGACAGUCgGGCggCCGCU-CCAg -3'
miRNA:   3'- -CACGCCUGUCGGgCUGa-GGCGAaGGU- -5'
10705 3' -59.5 NC_002794.1 + 107250 0.77 0.232362
Target:  5'- -cGCGGACcuGGCCCGGCggagCCGCgccgUCCGc -3'
miRNA:   3'- caCGCCUG--UCGGGCUGa---GGCGa---AGGU- -5'
10705 3' -59.5 NC_002794.1 + 140773 0.75 0.312664
Target:  5'- cUGCGGGCGGCCCGGCagaacaugaUCCGUUacacggucuaUCCGg -3'
miRNA:   3'- cACGCCUGUCGGGCUG---------AGGCGA----------AGGU- -5'
10705 3' -59.5 NC_002794.1 + 92108 0.73 0.429324
Target:  5'- cGUGCGGAuuCAGaCCCGGCUgccgCCGCUgcCCAa -3'
miRNA:   3'- -CACGCCU--GUC-GGGCUGA----GGCGAa-GGU- -5'
10705 3' -59.5 NC_002794.1 + 34099 0.71 0.538949
Target:  5'- -cGuCGGGCGGCCCGGa-CCGCgacgUCCGc -3'
miRNA:   3'- caC-GCCUGUCGGGCUgaGGCGa---AGGU- -5'
10705 3' -59.5 NC_002794.1 + 16291 0.7 0.558233
Target:  5'- -gGCGGAgucUAGCCUGGCggCCGCggCCGg -3'
miRNA:   3'- caCGCCU---GUCGGGCUGa-GGCGaaGGU- -5'
10705 3' -59.5 NC_002794.1 + 45464 0.7 0.558233
Target:  5'- -aGCGGGCccagggucccgAGCUCGGcCUCCGCcgUCCAc -3'
miRNA:   3'- caCGCCUG-----------UCGGGCU-GAGGCGa-AGGU- -5'
10705 3' -59.5 NC_002794.1 + 104483 0.7 0.567949
Target:  5'- aUGCGGGCGGCCaCGGCggCCGggUCgGg -3'
miRNA:   3'- cACGCCUGUCGG-GCUGa-GGCgaAGgU- -5'
10705 3' -59.5 NC_002794.1 + 48255 0.7 0.576729
Target:  5'- -aGCaGGAuCAGCCCGcagcacaggcaggGCUCCGCcgUCCGa -3'
miRNA:   3'- caCG-CCU-GUCGGGC-------------UGAGGCGa-AGGU- -5'
10705 3' -59.5 NC_002794.1 + 47324 0.7 0.577706
Target:  5'- -gGUGGGguGCCCGGCUCCcgcggcggcgGCcUCCGg -3'
miRNA:   3'- caCGCCUguCGGGCUGAGG----------CGaAGGU- -5'
10705 3' -59.5 NC_002794.1 + 40611 0.7 0.597325
Target:  5'- -cGCcGGC-GUCCGACUCCGCggagUCCGc -3'
miRNA:   3'- caCGcCUGuCGGGCUGAGGCGa---AGGU- -5'
10705 3' -59.5 NC_002794.1 + 180005 0.69 0.617039
Target:  5'- -gGCGGGCccGGCCaCGACgacggCCGCggccgUCCGa -3'
miRNA:   3'- caCGCCUG--UCGG-GCUGa----GGCGa----AGGU- -5'
10705 3' -59.5 NC_002794.1 + 45001 0.69 0.640746
Target:  5'- cGUGCGGACcuguugcagacucguGGCCgGguGCUCCGCacCCAg -3'
miRNA:   3'- -CACGCCUG---------------UCGGgC--UGAGGCGaaGGU- -5'
10705 3' -59.5 NC_002794.1 + 68777 0.69 0.656537
Target:  5'- -cGcCGGAC-GCCCGGCUCuCGCgccCCGg -3'
miRNA:   3'- caC-GCCUGuCGGGCUGAG-GCGaa-GGU- -5'
10705 3' -59.5 NC_002794.1 + 58080 0.69 0.656537
Target:  5'- -gGaCGGGCGGCCCGGCgcCCGCgcucgaCCGc -3'
miRNA:   3'- caC-GCCUGUCGGGCUGa-GGCGaa----GGU- -5'
10705 3' -59.5 NC_002794.1 + 75863 0.68 0.676206
Target:  5'- -cGCuGGACGGUCCGcgUCCGCUugacgUCCAc -3'
miRNA:   3'- caCG-CCUGUCGGGCugAGGCGA-----AGGU- -5'
10705 3' -59.5 NC_002794.1 + 112290 0.68 0.685995
Target:  5'- cGUGuCGGGCGGCCCcccGGgUCCGaCUUCg- -3'
miRNA:   3'- -CAC-GCCUGUCGGG---CUgAGGC-GAAGgu -5'
10705 3' -59.5 NC_002794.1 + 83879 0.68 0.695741
Target:  5'- -gGCGcGACGGCCCcgGGCUCgGCgcCCGa -3'
miRNA:   3'- caCGC-CUGUCGGG--CUGAGgCGaaGGU- -5'
10705 3' -59.5 NC_002794.1 + 40128 0.68 0.703503
Target:  5'- -aGCGGAgAGCCaCGGgcuCUCCGCggcuucugcgcgUCCAg -3'
miRNA:   3'- caCGCCUgUCGG-GCU---GAGGCGa-----------AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.