miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10705 3' -59.5 NC_002794.1 + 116909 0.67 0.771238
Target:  5'- -gGCGGcCGGUCCGGCgUCgGCU-CCGg -3'
miRNA:   3'- caCGCCuGUCGGGCUG-AGgCGAaGGU- -5'
10705 3' -59.5 NC_002794.1 + 187824 0.67 0.762119
Target:  5'- -aGCGGAgCGcGCUCGGCUCgGCgcgCCGa -3'
miRNA:   3'- caCGCCU-GU-CGGGCUGAGgCGaa-GGU- -5'
10705 3' -59.5 NC_002794.1 + 145570 0.67 0.762119
Target:  5'- -cGCGGACgAGCgCCGACggagCgGCggCCGg -3'
miRNA:   3'- caCGCCUG-UCG-GGCUGa---GgCGaaGGU- -5'
10705 3' -59.5 NC_002794.1 + 8119 0.67 0.750105
Target:  5'- -aGCGGGCGGCggccuccucggugaCCGGCgacggcaCCGCUUCUc -3'
miRNA:   3'- caCGCCUGUCG--------------GGCUGa------GGCGAAGGu -5'
10705 3' -59.5 NC_002794.1 + 90946 0.67 0.743567
Target:  5'- -gGCGGGCugugcgccgaGGCCCgGGC-CCGCUUCg- -3'
miRNA:   3'- caCGCCUG----------UCGGG-CUGaGGCGAAGgu -5'
10705 3' -59.5 NC_002794.1 + 82147 0.67 0.743567
Target:  5'- -gGCGGACacccGGCCCGacgGCUCCgGCgcCCGa -3'
miRNA:   3'- caCGCCUG----UCGGGC---UGAGG-CGaaGGU- -5'
10705 3' -59.5 NC_002794.1 + 46243 0.67 0.73415
Target:  5'- -cGCcGGCGGCUCG--UCCGCUUCCu -3'
miRNA:   3'- caCGcCUGUCGGGCugAGGCGAAGGu -5'
10705 3' -59.5 NC_002794.1 + 100247 0.67 0.73415
Target:  5'- -gGCGu-CAGCCCgcuGAC-CCGCUUCCu -3'
miRNA:   3'- caCGCcuGUCGGG---CUGaGGCGAAGGu -5'
10705 3' -59.5 NC_002794.1 + 101527 0.67 0.73415
Target:  5'- -gGCGGGguGCCCGGCgCCaCgUUCCGa -3'
miRNA:   3'- caCGCCUguCGGGCUGaGGcG-AAGGU- -5'
10705 3' -59.5 NC_002794.1 + 133463 0.68 0.724651
Target:  5'- uUGCGGACggguaugcgGGCgCGACUCUugGCUUUCGc -3'
miRNA:   3'- cACGCCUG---------UCGgGCUGAGG--CGAAGGU- -5'
10705 3' -59.5 NC_002794.1 + 134584 0.68 0.724651
Target:  5'- gGUGCuagaGGACcucGGgCCGACUCCGgaUCCc -3'
miRNA:   3'- -CACG----CCUG---UCgGGCUGAGGCgaAGGu -5'
10705 3' -59.5 NC_002794.1 + 67892 0.68 0.715077
Target:  5'- -aGCGGACucccccucGCCCGuCUCgGCUcCCGg -3'
miRNA:   3'- caCGCCUGu-------CGGGCuGAGgCGAaGGU- -5'
10705 3' -59.5 NC_002794.1 + 104763 0.68 0.705438
Target:  5'- -aGCGGuCGGCCCGccggcGCUCCGacacgCCGa -3'
miRNA:   3'- caCGCCuGUCGGGC-----UGAGGCgaa--GGU- -5'
10705 3' -59.5 NC_002794.1 + 180735 0.68 0.705438
Target:  5'- -cGCGGACGacgccGUCCGGCUCCucggcgGCUUCg- -3'
miRNA:   3'- caCGCCUGU-----CGGGCUGAGG------CGAAGgu -5'
10705 3' -59.5 NC_002794.1 + 40128 0.68 0.703503
Target:  5'- -aGCGGAgAGCCaCGGgcuCUCCGCggcuucugcgcgUCCAg -3'
miRNA:   3'- caCGCCUgUCGG-GCU---GAGGCGa-----------AGGU- -5'
10705 3' -59.5 NC_002794.1 + 83879 0.68 0.695741
Target:  5'- -gGCGcGACGGCCCcgGGCUCgGCgcCCGa -3'
miRNA:   3'- caCGC-CUGUCGGG--CUGAGgCGaaGGU- -5'
10705 3' -59.5 NC_002794.1 + 112290 0.68 0.685995
Target:  5'- cGUGuCGGGCGGCCCcccGGgUCCGaCUUCg- -3'
miRNA:   3'- -CAC-GCCUGUCGGG---CUgAGGC-GAAGgu -5'
10705 3' -59.5 NC_002794.1 + 75863 0.68 0.676206
Target:  5'- -cGCuGGACGGUCCGcgUCCGCUugacgUCCAc -3'
miRNA:   3'- caCG-CCUGUCGGGCugAGGCGA-----AGGU- -5'
10705 3' -59.5 NC_002794.1 + 68777 0.69 0.656537
Target:  5'- -cGcCGGAC-GCCCGGCUCuCGCgccCCGg -3'
miRNA:   3'- caC-GCCUGuCGGGCUGAG-GCGaa-GGU- -5'
10705 3' -59.5 NC_002794.1 + 58080 0.69 0.656537
Target:  5'- -gGaCGGGCGGCCCGGCgcCCGCgcucgaCCGc -3'
miRNA:   3'- caC-GCCUGUCGGGCUGa-GGCGaa----GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.