Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10705 | 5' | -53.2 | NC_002794.1 | + | 166917 | 0.68 | 0.960583 |
Target: 5'- aGGUGuGAGUCCGUGUCGAcuGGUauuaucagcacaaacGUCGa -3' miRNA: 3'- -CCAUcUUCAGGCACAGCU--UCG---------------CGGCc -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 153385 | 0.68 | 0.965892 |
Target: 5'- uGGUcGAucuGUCCGaucgcgagcUGUCGcGAGCGCCGc -3' miRNA: 3'- -CCAuCUu--CAGGC---------ACAGC-UUCGCGGCc -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 115873 | 0.68 | 0.959172 |
Target: 5'- gGGUccgGGgcGUCCGgggcguccgCGGAGCGCgGGg -3' miRNA: 3'- -CCA---UCuuCAGGCaca------GCUUCGCGgCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 87097 | 0.68 | 0.971793 |
Target: 5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3' miRNA: 3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 87139 | 0.68 | 0.971793 |
Target: 5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3' miRNA: 3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 115589 | 0.68 | 0.97445 |
Target: 5'- cGUAGcGG-CUGcgGUCGAcccgcucgcccGGCGCCGGg -3' miRNA: 3'- cCAUCuUCaGGCa-CAGCU-----------UCGCGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 115510 | 0.68 | 0.97445 |
Target: 5'- aGGUuGAGGUCCGccUGUCGcAGGaCGCggaGGa -3' miRNA: 3'- -CCAuCUUCAGGC--ACAGC-UUC-GCGg--CC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 115177 | 0.68 | 0.97445 |
Target: 5'- uGGUAGAcggcccGGUgCCGgcgGUCGAgccggcguAGCGCCu- -3' miRNA: 3'- -CCAUCU------UCA-GGCa--CAGCU--------UCGCGGcc -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 175232 | 0.68 | 0.971793 |
Target: 5'- cGUAGAAGU-CGUGUCGucGaucaGCgGGa -3' miRNA: 3'- cCAUCUUCAgGCACAGCuuCg---CGgCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 87223 | 0.68 | 0.971793 |
Target: 5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3' miRNA: 3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 87181 | 0.68 | 0.971793 |
Target: 5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3' miRNA: 3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 156052 | 0.69 | 0.938552 |
Target: 5'- --cGGggGcagCCGUGUCGAauagagcgGGCGuuGGc -3' miRNA: 3'- ccaUCuuCa--GGCACAGCU--------UCGCggCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 123774 | 0.69 | 0.947048 |
Target: 5'- cGUGGAcGccUCCGUGUUGGaggcgguGGCGCCGu -3' miRNA: 3'- cCAUCUuC--AGGCACAGCU-------UCGCGGCc -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 30068 | 0.69 | 0.943126 |
Target: 5'- ---cGggGUCCGgucgcccgGUCGAcgaGGCGCgCGGc -3' miRNA: 3'- ccauCuuCAGGCa-------CAGCU---UCGCG-GCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 142449 | 0.69 | 0.947472 |
Target: 5'- gGGUaagcAGAGGUCCc---CGAugAGCGCCGGc -3' miRNA: 3'- -CCA----UCUUCAGGcacaGCU--UCGCGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 106335 | 0.69 | 0.947472 |
Target: 5'- gGGUcGAcGGUUCGccggGUCGAcggcgggcgGGCGCCGGu -3' miRNA: 3'- -CCAuCU-UCAGGCa---CAGCU---------UCGCGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 156844 | 0.69 | 0.954345 |
Target: 5'- --cGGggGUCgGUGccgcgcguucccgcUCGAGGCGCCu- -3' miRNA: 3'- ccaUCuuCAGgCAC--------------AGCUUCGCGGcc -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 134202 | 0.69 | 0.955492 |
Target: 5'- uGGUGGggG-CCGUcgGUCGccAAGCGaCCGc -3' miRNA: 3'- -CCAUCuuCaGGCA--CAGC--UUCGC-GGCc -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 36898 | 0.7 | 0.928714 |
Target: 5'- --cAGAGcGUCCagagGUCGcGGCGCCGGc -3' miRNA: 3'- ccaUCUU-CAGGca--CAGCuUCGCGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 92698 | 0.7 | 0.912227 |
Target: 5'- uGGUGGAcaacccgcuGaCCGUGUCGAGccugucGCGCUGGc -3' miRNA: 3'- -CCAUCUu--------CaGGCACAGCUU------CGCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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