Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10705 | 5' | -53.2 | NC_002794.1 | + | 87097 | 0.68 | 0.971793 |
Target: 5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3' miRNA: 3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 87139 | 0.68 | 0.971793 |
Target: 5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3' miRNA: 3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 87181 | 0.68 | 0.971793 |
Target: 5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3' miRNA: 3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 87223 | 0.68 | 0.971793 |
Target: 5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3' miRNA: 3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 175232 | 0.68 | 0.971793 |
Target: 5'- cGUAGAAGU-CGUGUCGucGaucaGCgGGa -3' miRNA: 3'- cCAUCUUCAgGCACAGCuuCg---CGgCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 115177 | 0.68 | 0.97445 |
Target: 5'- uGGUAGAcggcccGGUgCCGgcgGUCGAgccggcguAGCGCCu- -3' miRNA: 3'- -CCAUCU------UCA-GGCa--CAGCU--------UCGCGGcc -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 115510 | 0.68 | 0.97445 |
Target: 5'- aGGUuGAGGUCCGccUGUCGcAGGaCGCggaGGa -3' miRNA: 3'- -CCAuCUUCAGGC--ACAGC-UUC-GCGg--CC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 115589 | 0.68 | 0.97445 |
Target: 5'- cGUAGcGG-CUGcgGUCGAcccgcucgcccGGCGCCGGg -3' miRNA: 3'- cCAUCuUCaGGCa-CAGCU-----------UCGCGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 118254 | 0.67 | 0.97692 |
Target: 5'- gGGcUGGAGGUcggCCGgggCGGcGGCGCCGGc -3' miRNA: 3'- -CC-AUCUUCA---GGCacaGCU-UCGCGGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 76778 | 0.67 | 0.981328 |
Target: 5'- cGUAGAAGUCCGaGcCGGgcgGGCGagCGGc -3' miRNA: 3'- cCAUCUUCAGGCaCaGCU---UCGCg-GCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 89950 | 0.67 | 0.97692 |
Target: 5'- --cGGGAG-CCGacGUCGAGGCGuUCGGa -3' miRNA: 3'- ccaUCUUCaGGCa-CAGCUUCGC-GGCC- -5' |
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10705 | 5' | -53.2 | NC_002794.1 | + | 2255 | 0.66 | 0.991939 |
Target: 5'- --aGGAAGUCCGaggCGAc-CGCCGGc -3' miRNA: 3'- ccaUCUUCAGGCacaGCUucGCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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