miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10705 5' -53.2 NC_002794.1 + 87097 0.68 0.971793
Target:  5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3'
miRNA:   3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5'
10705 5' -53.2 NC_002794.1 + 87139 0.68 0.971793
Target:  5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3'
miRNA:   3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5'
10705 5' -53.2 NC_002794.1 + 87181 0.68 0.971793
Target:  5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3'
miRNA:   3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5'
10705 5' -53.2 NC_002794.1 + 87223 0.68 0.971793
Target:  5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3'
miRNA:   3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5'
10705 5' -53.2 NC_002794.1 + 175232 0.68 0.971793
Target:  5'- cGUAGAAGU-CGUGUCGucGaucaGCgGGa -3'
miRNA:   3'- cCAUCUUCAgGCACAGCuuCg---CGgCC- -5'
10705 5' -53.2 NC_002794.1 + 65809 0.68 0.968942
Target:  5'- ---cGAcGUCCGUuUCGAucAGCGCCGa -3'
miRNA:   3'- ccauCUuCAGGCAcAGCU--UCGCGGCc -5'
10705 5' -53.2 NC_002794.1 + 14457 0.68 0.968942
Target:  5'- cGGgcGA---CCGUGUCGAGcggcGCGCCGc -3'
miRNA:   3'- -CCauCUucaGGCACAGCUU----CGCGGCc -5'
10705 5' -53.2 NC_002794.1 + 42465 0.68 0.968942
Target:  5'- uGgcGucGUCCaUGUCGcgcGCGCCGGg -3'
miRNA:   3'- cCauCuuCAGGcACAGCuu-CGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 153385 0.68 0.965892
Target:  5'- uGGUcGAucuGUCCGaucgcgagcUGUCGcGAGCGCCGc -3'
miRNA:   3'- -CCAuCUu--CAGGC---------ACAGC-UUCGCGGCc -5'
10705 5' -53.2 NC_002794.1 + 166917 0.68 0.960583
Target:  5'- aGGUGuGAGUCCGUGUCGAcuGGUauuaucagcacaaacGUCGa -3'
miRNA:   3'- -CCAUcUUCAGGCACAGCU--UCG---------------CGGCc -5'
10705 5' -53.2 NC_002794.1 + 115873 0.68 0.959172
Target:  5'- gGGUccgGGgcGUCCGgggcguccgCGGAGCGCgGGg -3'
miRNA:   3'- -CCA---UCuuCAGGCaca------GCUUCGCGgCC- -5'
10705 5' -53.2 NC_002794.1 + 134202 0.69 0.955492
Target:  5'- uGGUGGggG-CCGUcgGUCGccAAGCGaCCGc -3'
miRNA:   3'- -CCAUCuuCaGGCA--CAGC--UUCGC-GGCc -5'
10705 5' -53.2 NC_002794.1 + 156844 0.69 0.954345
Target:  5'- --cGGggGUCgGUGccgcgcguucccgcUCGAGGCGCCu- -3'
miRNA:   3'- ccaUCuuCAGgCAC--------------AGCUUCGCGGcc -5'
10705 5' -53.2 NC_002794.1 + 106335 0.69 0.947472
Target:  5'- gGGUcGAcGGUUCGccggGUCGAcggcgggcgGGCGCCGGu -3'
miRNA:   3'- -CCAuCU-UCAGGCa---CAGCU---------UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 142449 0.69 0.947472
Target:  5'- gGGUaagcAGAGGUCCc---CGAugAGCGCCGGc -3'
miRNA:   3'- -CCA----UCUUCAGGcacaGCU--UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 123774 0.69 0.947048
Target:  5'- cGUGGAcGccUCCGUGUUGGaggcgguGGCGCCGu -3'
miRNA:   3'- cCAUCUuC--AGGCACAGCU-------UCGCGGCc -5'
10705 5' -53.2 NC_002794.1 + 30068 0.69 0.943126
Target:  5'- ---cGggGUCCGgucgcccgGUCGAcgaGGCGCgCGGc -3'
miRNA:   3'- ccauCuuCAGGCa-------CAGCU---UCGCG-GCC- -5'
10705 5' -53.2 NC_002794.1 + 156052 0.69 0.938552
Target:  5'- --cGGggGcagCCGUGUCGAauagagcgGGCGuuGGc -3'
miRNA:   3'- ccaUCuuCa--GGCACAGCU--------UCGCggCC- -5'
10705 5' -53.2 NC_002794.1 + 110860 0.7 0.935697
Target:  5'- -cUGGAAGUCCacGUCGuccggcacguucuccAGGUGCCGGg -3'
miRNA:   3'- ccAUCUUCAGGcaCAGC---------------UUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 36898 0.7 0.928714
Target:  5'- --cAGAGcGUCCagagGUCGcGGCGCCGGc -3'
miRNA:   3'- ccaUCUU-CAGGca--CAGCuUCGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.