miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 3' -56.5 NC_002794.1 + 185171 0.66 0.915069
Target:  5'- --cCGCCGG-CgCGGCGcggUCGGCGCg -3'
miRNA:   3'- uuuGCGGCUaG-GCCGUca-AGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 32010 0.66 0.920718
Target:  5'- cGACGCaGA-CCaGGCAGgggacgCGGCGCUg -3'
miRNA:   3'- uUUGCGgCUaGG-CCGUCaa----GCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 138133 0.66 0.915069
Target:  5'- --uCGCCGGUCucgggCGGCGGUUucuugcgcagcCGGCAUUu -3'
miRNA:   3'- uuuGCGGCUAG-----GCCGUCAA-----------GCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 131254 0.66 0.915069
Target:  5'- cGGACGCCG--CCGGCAccaccgcCGGCACc -3'
miRNA:   3'- -UUUGCGGCuaGGCCGUcaa----GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 29203 0.67 0.869153
Target:  5'- --cCGUCcGUCCGGCGG-UCGGCGg- -3'
miRNA:   3'- uuuGCGGcUAGGCCGUCaAGCCGUga -5'
10706 3' -56.5 NC_002794.1 + 87350 0.67 0.869153
Target:  5'- cAGCaGCgGGUCCGGCGGcgagCGGCGu- -3'
miRNA:   3'- uUUG-CGgCUAGGCCGUCaa--GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 137601 0.67 0.869153
Target:  5'- ---aGCCGccgCCGGCGGUcgCGGCGg- -3'
miRNA:   3'- uuugCGGCua-GGCCGUCAa-GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 58866 0.67 0.854092
Target:  5'- --uCGCCGA-CCGGCAGc-CGuGCGCg -3'
miRNA:   3'- uuuGCGGCUaGGCCGUCaaGC-CGUGa -5'
10706 3' -56.5 NC_002794.1 + 145810 0.67 0.861724
Target:  5'- cGACGCCGccgCCGGCGGcgagcCGaGCGCg -3'
miRNA:   3'- uUUGCGGCua-GGCCGUCaa---GC-CGUGa -5'
10706 3' -56.5 NC_002794.1 + 137648 0.67 0.861724
Target:  5'- cGGGCGCCGGgccUCCGGCgccgcuGGUgCGGaCGCa -3'
miRNA:   3'- -UUUGCGGCU---AGGCCG------UCAaGCC-GUGa -5'
10706 3' -56.5 NC_002794.1 + 126252 0.67 0.869153
Target:  5'- uGGCGCgCGAggUCGGCGGcuggcuggCGGCGCUg -3'
miRNA:   3'- uUUGCG-GCUa-GGCCGUCaa------GCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 66042 0.67 0.876373
Target:  5'- --uCGUCGggCCGGCAGcggCGGC-CUg -3'
miRNA:   3'- uuuGCGGCuaGGCCGUCaa-GCCGuGA- -5'
10706 3' -56.5 NC_002794.1 + 136716 0.67 0.890168
Target:  5'- cAGGCGCCGGUcCCGGCGuccaGGCGg- -3'
miRNA:   3'- -UUUGCGGCUA-GGCCGUcaagCCGUga -5'
10706 3' -56.5 NC_002794.1 + 114750 0.67 0.88338
Target:  5'- cGGCGCCGcccgCCGGCgccGGUccUCGGCGg- -3'
miRNA:   3'- uUUGCGGCua--GGCCG---UCA--AGCCGUga -5'
10706 3' -56.5 NC_002794.1 + 55258 0.67 0.890168
Target:  5'- aGGACGCCGAagagCCGGgGGg-CGGCGgUg -3'
miRNA:   3'- -UUUGCGGCUa---GGCCgUCaaGCCGUgA- -5'
10706 3' -56.5 NC_002794.1 + 108308 0.67 0.880603
Target:  5'- --cCGuuGcgCCGGCGGUgggucuuggacggCGGCGCa -3'
miRNA:   3'- uuuGCggCuaGGCCGUCAa------------GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 108378 0.67 0.879201
Target:  5'- cGGGCGCCgGAgcggggagcggaggcUCCGGCGG--CGGCGCc -3'
miRNA:   3'- -UUUGCGG-CU---------------AGGCCGUCaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 137389 0.67 0.876373
Target:  5'- cGACGCgGGUCCGGUcuGUcCGGCGu- -3'
miRNA:   3'- uUUGCGgCUAGGCCGu-CAaGCCGUga -5'
10706 3' -56.5 NC_002794.1 + 60641 0.68 0.838246
Target:  5'- cGGCGCCGGcggcgCCGGCcaccCGGCGCg -3'
miRNA:   3'- uUUGCGGCUa----GGCCGucaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 112831 0.68 0.838246
Target:  5'- --cCGCCGAguaCGGCuGcucgUCGGCGCg -3'
miRNA:   3'- uuuGCGGCUag-GCCGuCa---AGCCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.