miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 3' -56.5 NC_002794.1 + 61161 0.68 0.821666
Target:  5'- cGAGCGCgCGGUCCGGa---UCGGCGgCUg -3'
miRNA:   3'- -UUUGCG-GCUAGGCCgucaAGCCGU-GA- -5'
10706 3' -56.5 NC_002794.1 + 131145 0.68 0.813119
Target:  5'- --cUGCCGAUCCGGUcgcacgccAGcaCGGCGCc -3'
miRNA:   3'- uuuGCGGCUAGGCCG--------UCaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 64832 0.68 0.821666
Target:  5'- cGGCGCCGAcgaCCGGaCGGcgcggCGGCACc -3'
miRNA:   3'- uUUGCGGCUa--GGCC-GUCaa---GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 53068 0.68 0.813119
Target:  5'- cAGCGCCGcgCCGcCAGcucgCGGCACc -3'
miRNA:   3'- uUUGCGGCuaGGCcGUCaa--GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 44223 0.68 0.830044
Target:  5'- cGGGCGCCGAgggcucggugCCgGGCGGcUCGGUGCc -3'
miRNA:   3'- -UUUGCGGCUa---------GG-CCGUCaAGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 62062 0.68 0.830872
Target:  5'- cGACGCCGGcggcgacgCCGGCGGcgacgacggcgacgCGGCGCg -3'
miRNA:   3'- uUUGCGGCUa-------GGCCGUCaa------------GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 44539 0.68 0.838246
Target:  5'- -cGCGCCGucgucgucgCCGGCGG--CGGCGCc -3'
miRNA:   3'- uuUGCGGCua-------GGCCGUCaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 193821 0.68 0.838246
Target:  5'- uGGCGCCGAcgcgUCgCGGCGc--CGGCACUu -3'
miRNA:   3'- uUUGCGGCU----AG-GCCGUcaaGCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 91261 0.68 0.838246
Target:  5'- cGGACGCCGuucguggaCCGGCGcggccuguacGUgUCGGCGCUg -3'
miRNA:   3'- -UUUGCGGCua------GGCCGU----------CA-AGCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 112831 0.68 0.838246
Target:  5'- --cCGCCGAguaCGGCuGcucgUCGGCGCg -3'
miRNA:   3'- uuuGCGGCUag-GCCGuCa---AGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 60641 0.68 0.838246
Target:  5'- cGGCGCCGGcggcgCCGGCcaccCGGCGCg -3'
miRNA:   3'- uUUGCGGCUa----GGCCGucaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 41251 0.68 0.846264
Target:  5'- --cCGCCGAcgCCGGCGGcccgUCGucGCGCUc -3'
miRNA:   3'- uuuGCGGCUa-GGCCGUCa---AGC--CGUGA- -5'
10706 3' -56.5 NC_002794.1 + 126600 0.69 0.786545
Target:  5'- uGAGCGCCGAggCCGGCGccgacGUcgCGGCGu- -3'
miRNA:   3'- -UUUGCGGCUa-GGCCGU-----CAa-GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 150537 0.69 0.786545
Target:  5'- ---aGCCGggCCGGCGccauggccGUcUCGGCGCUg -3'
miRNA:   3'- uuugCGGCuaGGCCGU--------CA-AGCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 161075 0.69 0.786545
Target:  5'- ---aGUCGGUCCGGUugauGUUCguGGCGCUa -3'
miRNA:   3'- uuugCGGCUAGGCCGu---CAAG--CCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 83826 0.69 0.795551
Target:  5'- -cACGCCGAgccUCCGGCcGaUCGGuCGCc -3'
miRNA:   3'- uuUGCGGCU---AGGCCGuCaAGCC-GUGa -5'
10706 3' -56.5 NC_002794.1 + 77998 0.69 0.795551
Target:  5'- cGGGCGuuGuUCCGGCGG--CGGCGCc -3'
miRNA:   3'- -UUUGCggCuAGGCCGUCaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 86984 0.69 0.795551
Target:  5'- cGACGa-GGUCCGGCGGcuUUCGGCGg- -3'
miRNA:   3'- uUUGCggCUAGGCCGUC--AAGCCGUga -5'
10706 3' -56.5 NC_002794.1 + 103576 0.69 0.795551
Target:  5'- cGugGCCGAcgagcagcggUCgGGCAGgcagcggCGGCACg -3'
miRNA:   3'- uUugCGGCU----------AGgCCGUCaa-----GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 63311 0.69 0.786545
Target:  5'- uAACGaaCCGAUCCGGCGGggggccCGaGCGCg -3'
miRNA:   3'- uUUGC--GGCUAGGCCGUCaa----GC-CGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.