Results 21 - 40 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 116908 | 0.7 | 0.700439 |
Target: 5'- cGGCgGCCGGUCCGGCG--UCGGCu-- -3' miRNA: 3'- uUUG-CGGCUAGGCCGUcaAGCCGuga -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 151838 | 0.7 | 0.729967 |
Target: 5'- cGACGCCG-UUCGGCGaggcGUucaUCGGCGCg -3' miRNA: 3'- uUUGCGGCuAGGCCGU----CA---AGCCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 77998 | 0.69 | 0.795551 |
Target: 5'- cGGGCGuuGuUCCGGCGG--CGGCGCc -3' miRNA: 3'- -UUUGCggCuAGGCCGUCaaGCCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 126600 | 0.69 | 0.786545 |
Target: 5'- uGAGCGCCGAggCCGGCGccgacGUcgCGGCGu- -3' miRNA: 3'- -UUUGCGGCUa-GGCCGU-----CAa-GCCGUga -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 119699 | 0.69 | 0.803532 |
Target: 5'- --cUGCUGggCCGGCGGccacaacggcggcUUCGGCACc -3' miRNA: 3'- uuuGCGGCuaGGCCGUC-------------AAGCCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 147681 | 0.69 | 0.75875 |
Target: 5'- -cGCGCuCGAggacCCGGCGGcgaugCGGCGCa -3' miRNA: 3'- uuUGCG-GCUa---GGCCGUCaa---GCCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 150537 | 0.69 | 0.786545 |
Target: 5'- ---aGCCGggCCGGCGccauggccGUcUCGGCGCUg -3' miRNA: 3'- uuugCGGCuaGGCCGU--------CA-AGCCGUGA- -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 86984 | 0.69 | 0.795551 |
Target: 5'- cGACGa-GGUCCGGCGGcuUUCGGCGg- -3' miRNA: 3'- uUUGCggCUAGGCCGUC--AAGCCGUga -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 32859 | 0.69 | 0.75875 |
Target: 5'- cAGCgGCCGAgCCGGCGGgcggCGGCGg- -3' miRNA: 3'- uUUG-CGGCUaGGCCGUCaa--GCCGUga -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 161075 | 0.69 | 0.786545 |
Target: 5'- ---aGUCGGUCCGGUugauGUUCguGGCGCUa -3' miRNA: 3'- uuugCGGCUAGGCCGu---CAAG--CCGUGA- -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 123510 | 0.69 | 0.777405 |
Target: 5'- --uCGCCGGgcugCCGGCcugcagcuGGUUCgGGCACa -3' miRNA: 3'- uuuGCGGCUa---GGCCG--------UCAAG-CCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 84467 | 0.69 | 0.768136 |
Target: 5'- aAAGCGCCGucUCCGGCcuuuacGUUCGacGCGCUc -3' miRNA: 3'- -UUUGCGGCu-AGGCCGu-----CAAGC--CGUGA- -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 83826 | 0.69 | 0.795551 |
Target: 5'- -cACGCCGAgccUCCGGCcGaUCGGuCGCc -3' miRNA: 3'- uuUGCGGCU---AGGCCGuCaAGCC-GUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 63311 | 0.69 | 0.786545 |
Target: 5'- uAACGaaCCGAUCCGGCGGggggccCGaGCGCg -3' miRNA: 3'- uUUGC--GGCUAGGCCGUCaa----GC-CGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 103576 | 0.69 | 0.795551 |
Target: 5'- cGugGCCGAcgagcagcggUCgGGCAGgcagcggCGGCACg -3' miRNA: 3'- uUugCGGCU----------AGgCCGUCaa-----GCCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 141437 | 0.69 | 0.768136 |
Target: 5'- gGGGCGCCGGgggcgCCGGgAG--CGGCGCg -3' miRNA: 3'- -UUUGCGGCUa----GGCCgUCaaGCCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 131145 | 0.68 | 0.813119 |
Target: 5'- --cUGCCGAUCCGGUcgcacgccAGcaCGGCGCc -3' miRNA: 3'- uuuGCGGCUAGGCCG--------UCaaGCCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 64832 | 0.68 | 0.821666 |
Target: 5'- cGGCGCCGAcgaCCGGaCGGcgcggCGGCACc -3' miRNA: 3'- uUUGCGGCUa--GGCC-GUCaa---GCCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 53068 | 0.68 | 0.813119 |
Target: 5'- cAGCGCCGcgCCGcCAGcucgCGGCACc -3' miRNA: 3'- uUUGCGGCuaGGCcGUCaa--GCCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 61161 | 0.68 | 0.821666 |
Target: 5'- cGAGCGCgCGGUCCGGa---UCGGCGgCUg -3' miRNA: 3'- -UUUGCG-GCUAGGCCgucaAGCCGU-GA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home