Results 61 - 80 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 63311 | 0.69 | 0.786545 |
Target: 5'- uAACGaaCCGAUCCGGCGGggggccCGaGCGCg -3' miRNA: 3'- uUUGC--GGCUAGGCCGUCaa----GC-CGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 123510 | 0.69 | 0.777405 |
Target: 5'- --uCGCCGGgcugCCGGCcugcagcuGGUUCgGGCACa -3' miRNA: 3'- uuuGCGGCUa---GGCCG--------UCAAG-CCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 84467 | 0.69 | 0.768136 |
Target: 5'- aAAGCGCCGucUCCGGCcuuuacGUUCGacGCGCUc -3' miRNA: 3'- -UUUGCGGCu-AGGCCGu-----CAAGC--CGUGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 141437 | 0.69 | 0.768136 |
Target: 5'- gGGGCGCCGGgggcgCCGGgAG--CGGCGCg -3' miRNA: 3'- -UUUGCGGCUa----GGCCgUCaaGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 147681 | 0.69 | 0.75875 |
Target: 5'- -cGCGCuCGAggacCCGGCGGcgaugCGGCGCa -3' miRNA: 3'- uuUGCG-GCUa---GGCCGUCaa---GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 32859 | 0.69 | 0.75875 |
Target: 5'- cAGCgGCCGAgCCGGCGGgcggCGGCGg- -3' miRNA: 3'- uUUG-CGGCUaGGCCGUCaa--GCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 142156 | 0.7 | 0.749253 |
Target: 5'- gAGGCGgCGGUagcaCCGGCAGcgUCGGCAg- -3' miRNA: 3'- -UUUGCgGCUA----GGCCGUCa-AGCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 89721 | 0.7 | 0.749253 |
Target: 5'- --gUGCCGAUCCGcGCGGcgUCGGUcCUu -3' miRNA: 3'- uuuGCGGCUAGGC-CGUCa-AGCCGuGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 12199 | 0.7 | 0.739656 |
Target: 5'- cGGGCGCCGcucggacgugCCGGCGGcgUCGGCGg- -3' miRNA: 3'- -UUUGCGGCua--------GGCCGUCa-AGCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 112250 | 0.7 | 0.739656 |
Target: 5'- cGAACGCCG--CCGGCGGgacCGGCGuCUc -3' miRNA: 3'- -UUUGCGGCuaGGCCGUCaa-GCCGU-GA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 151838 | 0.7 | 0.729967 |
Target: 5'- cGACGCCG-UUCGGCGaggcGUucaUCGGCGCg -3' miRNA: 3'- uUUGCGGCuAGGCCGU----CA---AGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 112338 | 0.7 | 0.720195 |
Target: 5'- -cGCGCCGG-CCGGCGGcgcCGGCGg- -3' miRNA: 3'- uuUGCGGCUaGGCCGUCaa-GCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 116908 | 0.7 | 0.700439 |
Target: 5'- cGGCgGCCGGUCCGGCG--UCGGCu-- -3' miRNA: 3'- uUUG-CGGCUAGGCCGUcaAGCCGuga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 37739 | 0.7 | 0.700439 |
Target: 5'- cGGCGCCG--CCGGCGG--CGGCGCg -3' miRNA: 3'- uUUGCGGCuaGGCCGUCaaGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 17500 | 0.71 | 0.690472 |
Target: 5'- --uCGCCGAcgCCGGCcgAGaUCGGCGCc -3' miRNA: 3'- uuuGCGGCUa-GGCCG--UCaAGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 93998 | 0.71 | 0.690472 |
Target: 5'- cGGACGCCGGcgCCGGCGGcgggcCGGCGg- -3' miRNA: 3'- -UUUGCGGCUa-GGCCGUCaa---GCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 106980 | 0.71 | 0.690472 |
Target: 5'- cGGCgGCCGG-CaCGGCGGUggCGGCGCUg -3' miRNA: 3'- uUUG-CGGCUaG-GCCGUCAa-GCCGUGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 180741 | 0.71 | 0.66032 |
Target: 5'- cGACGCCG-UCCGGCuccUCGGCGg- -3' miRNA: 3'- uUUGCGGCuAGGCCGucaAGCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 181536 | 0.71 | 0.650214 |
Target: 5'- --cCGCCG--CCGGCGGgcCGGCGCUc -3' miRNA: 3'- uuuGCGGCuaGGCCGUCaaGCCGUGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 107522 | 0.72 | 0.640094 |
Target: 5'- cGACGCCGAcggCCGGCg---CGGCGCc -3' miRNA: 3'- uUUGCGGCUa--GGCCGucaaGCCGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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