Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 100600 | 0.66 | 0.903075 |
Target: 5'- -cGCGCCGAUcCCGGgGGUgUUGGUcuACg -3' miRNA: 3'- uuUGCGGCUA-GGCCgUCA-AGCCG--UGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 101495 | 0.79 | 0.275002 |
Target: 5'- cGGCgGCCGGUCCGaGCGGUgCGGCACa -3' miRNA: 3'- uUUG-CGGCUAGGC-CGUCAaGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 101551 | 0.66 | 0.926133 |
Target: 5'- cGAACGCCGuuccgaacgCCGGCGGgagugcCGGC-Cg -3' miRNA: 3'- -UUUGCGGCua-------GGCCGUCaa----GCCGuGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 102037 | 0.66 | 0.926133 |
Target: 5'- --uCGCCGAgCCGGC-GUuccUCGcGCGCUu -3' miRNA: 3'- uuuGCGGCUaGGCCGuCA---AGC-CGUGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 103576 | 0.69 | 0.795551 |
Target: 5'- cGugGCCGAcgagcagcggUCgGGCAGgcagcggCGGCACg -3' miRNA: 3'- uUugCGGCU----------AGgCCGUCaa-----GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 104743 | 0.66 | 0.926133 |
Target: 5'- gGAGCGCuCGAUCUcguGGUAGcggUCGGCcCg -3' miRNA: 3'- -UUUGCG-GCUAGG---CCGUCa--AGCCGuGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 106365 | 0.66 | 0.915069 |
Target: 5'- cGGGCGCCGGUUCGcGCGGag-GGCAg- -3' miRNA: 3'- -UUUGCGGCUAGGC-CGUCaagCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 106980 | 0.71 | 0.690472 |
Target: 5'- cGGCgGCCGG-CaCGGCGGUggCGGCGCUg -3' miRNA: 3'- uUUG-CGGCUaG-GCCGUCAa-GCCGUGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 107315 | 0.78 | 0.330223 |
Target: 5'- gGGGCGCCG-UCCGcGCGGUUCGGCu-- -3' miRNA: 3'- -UUUGCGGCuAGGC-CGUCAAGCCGuga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 107522 | 0.72 | 0.640094 |
Target: 5'- cGACGCCGAcggCCGGCg---CGGCGCc -3' miRNA: 3'- uUUGCGGCUa--GGCCGucaaGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 108308 | 0.67 | 0.880603 |
Target: 5'- --cCGuuGcgCCGGCGGUgggucuuggacggCGGCGCa -3' miRNA: 3'- uuuGCggCuaGGCCGUCAa------------GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 108378 | 0.67 | 0.879201 |
Target: 5'- cGGGCGCCgGAgcggggagcggaggcUCCGGCGG--CGGCGCc -3' miRNA: 3'- -UUUGCGG-CU---------------AGGCCGUCaaGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 111317 | 0.66 | 0.909188 |
Target: 5'- gAGACGCCGggCCaGCGGcgCGGgcCGCa -3' miRNA: 3'- -UUUGCGGCuaGGcCGUCaaGCC--GUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 112250 | 0.7 | 0.739656 |
Target: 5'- cGAACGCCG--CCGGCGGgacCGGCGuCUc -3' miRNA: 3'- -UUUGCGGCuaGGCCGUCaa-GCCGU-GA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 112338 | 0.7 | 0.720195 |
Target: 5'- -cGCGCCGG-CCGGCGGcgcCGGCGg- -3' miRNA: 3'- uuUGCGGCUaGGCCGUCaa-GCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 112831 | 0.68 | 0.838246 |
Target: 5'- --cCGCCGAguaCGGCuGcucgUCGGCGCg -3' miRNA: 3'- uuuGCGGCUag-GCCGuCa---AGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 114750 | 0.67 | 0.88338 |
Target: 5'- cGGCGCCGcccgCCGGCgccGGUccUCGGCGg- -3' miRNA: 3'- uUUGCGGCua--GGCCG---UCA--AGCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 116908 | 0.7 | 0.700439 |
Target: 5'- cGGCgGCCGGUCCGGCG--UCGGCu-- -3' miRNA: 3'- uUUG-CGGCUAGGCCGUcaAGCCGuga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 119699 | 0.69 | 0.803532 |
Target: 5'- --cUGCUGggCCGGCGGccacaacggcggcUUCGGCACc -3' miRNA: 3'- uuuGCGGCuaGGCCGUC-------------AAGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 120069 | 0.66 | 0.903075 |
Target: 5'- cGGAgGCCGAcgCGGCGGUggCGGCGa- -3' miRNA: 3'- -UUUgCGGCUagGCCGUCAa-GCCGUga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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