miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 3' -56.5 NC_002794.1 + 136716 0.67 0.890168
Target:  5'- cAGGCGCCGGUcCCGGCGuccaGGCGg- -3'
miRNA:   3'- -UUUGCGGCUA-GGCCGUcaagCCGUga -5'
10706 3' -56.5 NC_002794.1 + 133381 0.66 0.920718
Target:  5'- --uCGUCG-UCCGGCGGUcaugaUCGGCcCg -3'
miRNA:   3'- uuuGCGGCuAGGCCGUCA-----AGCCGuGa -5'
10706 3' -56.5 NC_002794.1 + 131254 0.66 0.915069
Target:  5'- cGGACGCCG--CCGGCAccaccgcCGGCACc -3'
miRNA:   3'- -UUUGCGGCuaGGCCGUcaa----GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 131145 0.68 0.813119
Target:  5'- --cUGCCGAUCCGGUcgcacgccAGcaCGGCGCc -3'
miRNA:   3'- uuuGCGGCUAGGCCG--------UCaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 129208 0.66 0.903075
Target:  5'- cGAGCgGCCGA--CGGCGGUggauaGGCGCg -3'
miRNA:   3'- -UUUG-CGGCUagGCCGUCAag---CCGUGa -5'
10706 3' -56.5 NC_002794.1 + 126600 0.69 0.786545
Target:  5'- uGAGCGCCGAggCCGGCGccgacGUcgCGGCGu- -3'
miRNA:   3'- -UUUGCGGCUa-GGCCGU-----CAa-GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 126252 0.67 0.869153
Target:  5'- uGGCGCgCGAggUCGGCGGcuggcuggCGGCGCUg -3'
miRNA:   3'- uUUGCG-GCUa-GGCCGUCaa------GCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 123510 0.69 0.777405
Target:  5'- --uCGCCGGgcugCCGGCcugcagcuGGUUCgGGCACa -3'
miRNA:   3'- uuuGCGGCUa---GGCCG--------UCAAG-CCGUGa -5'
10706 3' -56.5 NC_002794.1 + 120069 0.66 0.903075
Target:  5'- cGGAgGCCGAcgCGGCGGUggCGGCGa- -3'
miRNA:   3'- -UUUgCGGCUagGCCGUCAa-GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 119699 0.69 0.803532
Target:  5'- --cUGCUGggCCGGCGGccacaacggcggcUUCGGCACc -3'
miRNA:   3'- uuuGCGGCuaGGCCGUC-------------AAGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 116908 0.7 0.700439
Target:  5'- cGGCgGCCGGUCCGGCG--UCGGCu-- -3'
miRNA:   3'- uUUG-CGGCUAGGCCGUcaAGCCGuga -5'
10706 3' -56.5 NC_002794.1 + 114750 0.67 0.88338
Target:  5'- cGGCGCCGcccgCCGGCgccGGUccUCGGCGg- -3'
miRNA:   3'- uUUGCGGCua--GGCCG---UCA--AGCCGUga -5'
10706 3' -56.5 NC_002794.1 + 112831 0.68 0.838246
Target:  5'- --cCGCCGAguaCGGCuGcucgUCGGCGCg -3'
miRNA:   3'- uuuGCGGCUag-GCCGuCa---AGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 112338 0.7 0.720195
Target:  5'- -cGCGCCGG-CCGGCGGcgcCGGCGg- -3'
miRNA:   3'- uuUGCGGCUaGGCCGUCaa-GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 112250 0.7 0.739656
Target:  5'- cGAACGCCG--CCGGCGGgacCGGCGuCUc -3'
miRNA:   3'- -UUUGCGGCuaGGCCGUCaa-GCCGU-GA- -5'
10706 3' -56.5 NC_002794.1 + 111317 0.66 0.909188
Target:  5'- gAGACGCCGggCCaGCGGcgCGGgcCGCa -3'
miRNA:   3'- -UUUGCGGCuaGGcCGUCaaGCC--GUGa -5'
10706 3' -56.5 NC_002794.1 + 108378 0.67 0.879201
Target:  5'- cGGGCGCCgGAgcggggagcggaggcUCCGGCGG--CGGCGCc -3'
miRNA:   3'- -UUUGCGG-CU---------------AGGCCGUCaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 108308 0.67 0.880603
Target:  5'- --cCGuuGcgCCGGCGGUgggucuuggacggCGGCGCa -3'
miRNA:   3'- uuuGCggCuaGGCCGUCAa------------GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 107522 0.72 0.640094
Target:  5'- cGACGCCGAcggCCGGCg---CGGCGCc -3'
miRNA:   3'- uUUGCGGCUa--GGCCGucaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 107315 0.78 0.330223
Target:  5'- gGGGCGCCG-UCCGcGCGGUUCGGCu-- -3'
miRNA:   3'- -UUUGCGGCuAGGC-CGUCAAGCCGuga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.