Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 106980 | 0.71 | 0.690472 |
Target: 5'- cGGCgGCCGG-CaCGGCGGUggCGGCGCUg -3' miRNA: 3'- uUUG-CGGCUaG-GCCGUCAa-GCCGUGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 106365 | 0.66 | 0.915069 |
Target: 5'- cGGGCGCCGGUUCGcGCGGag-GGCAg- -3' miRNA: 3'- -UUUGCGGCUAGGC-CGUCaagCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 104743 | 0.66 | 0.926133 |
Target: 5'- gGAGCGCuCGAUCUcguGGUAGcggUCGGCcCg -3' miRNA: 3'- -UUUGCG-GCUAGG---CCGUCa--AGCCGuGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 103576 | 0.69 | 0.795551 |
Target: 5'- cGugGCCGAcgagcagcggUCgGGCAGgcagcggCGGCACg -3' miRNA: 3'- uUugCGGCU----------AGgCCGUCaa-----GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 102037 | 0.66 | 0.926133 |
Target: 5'- --uCGCCGAgCCGGC-GUuccUCGcGCGCUu -3' miRNA: 3'- uuuGCGGCUaGGCCGuCA---AGC-CGUGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 101551 | 0.66 | 0.926133 |
Target: 5'- cGAACGCCGuuccgaacgCCGGCGGgagugcCGGC-Cg -3' miRNA: 3'- -UUUGCGGCua-------GGCCGUCaa----GCCGuGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 101495 | 0.79 | 0.275002 |
Target: 5'- cGGCgGCCGGUCCGaGCGGUgCGGCACa -3' miRNA: 3'- uUUG-CGGCUAGGC-CGUCAaGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 100600 | 0.66 | 0.903075 |
Target: 5'- -cGCGCCGAUcCCGGgGGUgUUGGUcuACg -3' miRNA: 3'- uuUGCGGCUA-GGCCgUCA-AGCCG--UGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 93998 | 0.71 | 0.690472 |
Target: 5'- cGGACGCCGGcgCCGGCGGcgggcCGGCGg- -3' miRNA: 3'- -UUUGCGGCUa-GGCCGUCaa---GCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 91261 | 0.68 | 0.838246 |
Target: 5'- cGGACGCCGuucguggaCCGGCGcggccuguacGUgUCGGCGCUg -3' miRNA: 3'- -UUUGCGGCua------GGCCGU----------CA-AGCCGUGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 90082 | 0.66 | 0.926133 |
Target: 5'- ---gGCCGAUgUGGC---UCGGCACg -3' miRNA: 3'- uuugCGGCUAgGCCGucaAGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 89721 | 0.7 | 0.749253 |
Target: 5'- --gUGCCGAUCCGcGCGGcgUCGGUcCUu -3' miRNA: 3'- uuuGCGGCUAGGC-CGUCa-AGCCGuGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 87350 | 0.67 | 0.869153 |
Target: 5'- cAGCaGCgGGUCCGGCGGcgagCGGCGu- -3' miRNA: 3'- uUUG-CGgCUAGGCCGUCaa--GCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 86984 | 0.69 | 0.795551 |
Target: 5'- cGACGa-GGUCCGGCGGcuUUCGGCGg- -3' miRNA: 3'- uUUGCggCUAGGCCGUC--AAGCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 84467 | 0.69 | 0.768136 |
Target: 5'- aAAGCGCCGucUCCGGCcuuuacGUUCGacGCGCUc -3' miRNA: 3'- -UUUGCGGCu-AGGCCGu-----CAAGC--CGUGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 83826 | 0.69 | 0.795551 |
Target: 5'- -cACGCCGAgccUCCGGCcGaUCGGuCGCc -3' miRNA: 3'- uuUGCGGCU---AGGCCGuCaAGCC-GUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 82666 | 0.75 | 0.472705 |
Target: 5'- cGACGCCGcgCCGGCGGaUC-GCACg -3' miRNA: 3'- uUUGCGGCuaGGCCGUCaAGcCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 77998 | 0.69 | 0.795551 |
Target: 5'- cGGGCGuuGuUCCGGCGG--CGGCGCc -3' miRNA: 3'- -UUUGCggCuAGGCCGUCaaGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 73058 | 0.66 | 0.896735 |
Target: 5'- -cACGCUGAacuUCUGGCAGgaggacgGGCGCa -3' miRNA: 3'- uuUGCGGCU---AGGCCGUCaag----CCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 69182 | 0.68 | 0.830044 |
Target: 5'- cGGGCGCUGAuUCCGGCAcg-CGGCccGCa -3' miRNA: 3'- -UUUGCGGCU-AGGCCGUcaaGCCG--UGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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