Results 61 - 80 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 66726 | 0.73 | 0.579508 |
Target: 5'- --cCGCCGccaccgCCGGCGGUggcggCGGCGCg -3' miRNA: 3'- uuuGCGGCua----GGCCGUCAa----GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 66042 | 0.67 | 0.876373 |
Target: 5'- --uCGUCGggCCGGCAGcggCGGC-CUg -3' miRNA: 3'- uuuGCGGCuaGGCCGUCaa-GCCGuGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 65986 | 0.66 | 0.926133 |
Target: 5'- cAACGUCGAaCUgGGCGGUgauccCGGCACc -3' miRNA: 3'- uUUGCGGCUaGG-CCGUCAa----GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 65249 | 0.68 | 0.829214 |
Target: 5'- cGGCGgCGAUCCGGCcucgccgAGcggCGGCGCc -3' miRNA: 3'- uUUGCgGCUAGGCCG-------UCaa-GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 65173 | 0.72 | 0.640094 |
Target: 5'- uGGCGCCGAgaCCGGCGGgugcCGGCGa- -3' miRNA: 3'- uUUGCGGCUa-GGCCGUCaa--GCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 64832 | 0.68 | 0.821666 |
Target: 5'- cGGCGCCGAcgaCCGGaCGGcgcggCGGCACc -3' miRNA: 3'- uUUGCGGCUa--GGCC-GUCaa---GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 63311 | 0.69 | 0.786545 |
Target: 5'- uAACGaaCCGAUCCGGCGGggggccCGaGCGCg -3' miRNA: 3'- uUUGC--GGCUAGGCCGUCaa----GC-CGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 62062 | 0.68 | 0.830872 |
Target: 5'- cGACGCCGGcggcgacgCCGGCGGcgacgacggcgacgCGGCGCg -3' miRNA: 3'- uUUGCGGCUa-------GGCCGUCaa------------GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 61161 | 0.68 | 0.821666 |
Target: 5'- cGAGCGCgCGGUCCGGa---UCGGCGgCUg -3' miRNA: 3'- -UUUGCG-GCUAGGCCgucaAGCCGU-GA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 60641 | 0.68 | 0.838246 |
Target: 5'- cGGCGCCGGcggcgCCGGCcaccCGGCGCg -3' miRNA: 3'- uUUGCGGCUa----GGCCGucaaGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 58866 | 0.67 | 0.854092 |
Target: 5'- --uCGCCGA-CCGGCAGc-CGuGCGCg -3' miRNA: 3'- uuuGCGGCUaGGCCGUCaaGC-CGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 57407 | 0.66 | 0.909188 |
Target: 5'- cGGCGCCcgcguggCCGGCGugcuggUCGGCACg -3' miRNA: 3'- uUUGCGGcua----GGCCGUca----AGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 55258 | 0.67 | 0.890168 |
Target: 5'- aGGACGCCGAagagCCGGgGGg-CGGCGgUg -3' miRNA: 3'- -UUUGCGGCUa---GGCCgUCaaGCCGUgA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 53068 | 0.68 | 0.813119 |
Target: 5'- cAGCGCCGcgCCGcCAGcucgCGGCACc -3' miRNA: 3'- uUUGCGGCuaGGCcGUCaa--GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 49768 | 0.66 | 0.908587 |
Target: 5'- -cGCGCUcGUCUccccggaGGCGGUUgGGCACg -3' miRNA: 3'- uuUGCGGcUAGG-------CCGUCAAgCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 44539 | 0.68 | 0.838246 |
Target: 5'- -cGCGCCGucgucgucgCCGGCGG--CGGCGCc -3' miRNA: 3'- uuUGCGGCua-------GGCCGUCaaGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 44223 | 0.68 | 0.830044 |
Target: 5'- cGGGCGCCGAgggcucggugCCgGGCGGcUCGGUGCc -3' miRNA: 3'- -UUUGCGGCUa---------GG-CCGUCaAGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 41251 | 0.68 | 0.846264 |
Target: 5'- --cCGCCGAcgCCGGCGGcccgUCGucGCGCUc -3' miRNA: 3'- uuuGCGGCUa-GGCCGUCa---AGC--CGUGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 40399 | 0.66 | 0.915069 |
Target: 5'- --uCGCCGAUUCGGUcgcGGggUCGGCcgGCg -3' miRNA: 3'- uuuGCGGCUAGGCCG---UCa-AGCCG--UGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 37739 | 0.7 | 0.700439 |
Target: 5'- cGGCGCCG--CCGGCGG--CGGCGCg -3' miRNA: 3'- uUUGCGGCuaGGCCGUCaaGCCGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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