miRNA display CGI


Results 41 - 60 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 3' -56.5 NC_002794.1 + 102037 0.66 0.926133
Target:  5'- --uCGCCGAgCCGGC-GUuccUCGcGCGCUu -3'
miRNA:   3'- uuuGCGGCUaGGCCGuCA---AGC-CGUGA- -5'
10706 3' -56.5 NC_002794.1 + 90082 0.66 0.926133
Target:  5'- ---gGCCGAUgUGGC---UCGGCACg -3'
miRNA:   3'- uuugCGGCUAgGCCGucaAGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 65986 0.66 0.926133
Target:  5'- cAACGUCGAaCUgGGCGGUgauccCGGCACc -3'
miRNA:   3'- uUUGCGGCUaGG-CCGUCAa----GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 104743 0.66 0.926133
Target:  5'- gGAGCGCuCGAUCUcguGGUAGcggUCGGCcCg -3'
miRNA:   3'- -UUUGCG-GCUAGG---CCGUCa--AGCCGuGa -5'
10706 3' -56.5 NC_002794.1 + 101551 0.66 0.926133
Target:  5'- cGAACGCCGuuccgaacgCCGGCGGgagugcCGGC-Cg -3'
miRNA:   3'- -UUUGCGGCua-------GGCCGUCaa----GCCGuGa -5'
10706 3' -56.5 NC_002794.1 + 191659 0.66 0.909188
Target:  5'- --cCGCCGGgggacggcgCCGGCAGcggCGGCGg- -3'
miRNA:   3'- uuuGCGGCUa--------GGCCGUCaa-GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 111317 0.66 0.909188
Target:  5'- gAGACGCCGggCCaGCGGcgCGGgcCGCa -3'
miRNA:   3'- -UUUGCGGCuaGGcCGUCaaGCC--GUGa -5'
10706 3' -56.5 NC_002794.1 + 108378 0.67 0.879201
Target:  5'- cGGGCGCCgGAgcggggagcggaggcUCCGGCGG--CGGCGCc -3'
miRNA:   3'- -UUUGCGG-CU---------------AGGCCGUCaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 108308 0.67 0.880603
Target:  5'- --cCGuuGcgCCGGCGGUgggucuuggacggCGGCGCa -3'
miRNA:   3'- uuuGCggCuaGGCCGUCAa------------GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 55258 0.67 0.890168
Target:  5'- aGGACGCCGAagagCCGGgGGg-CGGCGgUg -3'
miRNA:   3'- -UUUGCGGCUa---GGCCgUCaaGCCGUgA- -5'
10706 3' -56.5 NC_002794.1 + 114750 0.67 0.88338
Target:  5'- cGGCGCCGcccgCCGGCgccGGUccUCGGCGg- -3'
miRNA:   3'- uUUGCGGCua--GGCCG---UCA--AGCCGUga -5'
10706 3' -56.5 NC_002794.1 + 136716 0.67 0.890168
Target:  5'- cAGGCGCCGGUcCCGGCGuccaGGCGg- -3'
miRNA:   3'- -UUUGCGGCUA-GGCCGUcaagCCGUga -5'
10706 3' -56.5 NC_002794.1 + 73058 0.66 0.896735
Target:  5'- -cACGCUGAacuUCUGGCAGgaggacgGGCGCa -3'
miRNA:   3'- uuUGCGGCU---AGGCCGUCaag----CCGUGa -5'
10706 3' -56.5 NC_002794.1 + 22719 0.66 0.896735
Target:  5'- cGGCGCCGAgagCCGGCGaacggUCGGUc-- -3'
miRNA:   3'- uUUGCGGCUa--GGCCGUca---AGCCGuga -5'
10706 3' -56.5 NC_002794.1 + 100600 0.66 0.903075
Target:  5'- -cGCGCCGAUcCCGGgGGUgUUGGUcuACg -3'
miRNA:   3'- uuUGCGGCUA-GGCCgUCA-AGCCG--UGa -5'
10706 3' -56.5 NC_002794.1 + 20748 0.66 0.903075
Target:  5'- -cGCGCUGAUCCGcCAGcucucggaaCGGCGCg -3'
miRNA:   3'- uuUGCGGCUAGGCcGUCaa-------GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 129208 0.66 0.903075
Target:  5'- cGAGCgGCCGA--CGGCGGUggauaGGCGCg -3'
miRNA:   3'- -UUUG-CGGCUagGCCGUCAag---CCGUGa -5'
10706 3' -56.5 NC_002794.1 + 120069 0.66 0.903075
Target:  5'- cGGAgGCCGAcgCGGCGGUggCGGCGa- -3'
miRNA:   3'- -UUUgCGGCUagGCCGUCAa-GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 49768 0.66 0.908587
Target:  5'- -cGCGCUcGUCUccccggaGGCGGUUgGGCACg -3'
miRNA:   3'- uuUGCGGcUAGG-------CCGUCAAgCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 57407 0.66 0.909188
Target:  5'- cGGCGCCcgcguggCCGGCGugcuggUCGGCACg -3'
miRNA:   3'- uUUGCGGcua----GGCCGUca----AGCCGUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.