Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 102037 | 0.66 | 0.926133 |
Target: 5'- --uCGCCGAgCCGGC-GUuccUCGcGCGCUu -3' miRNA: 3'- uuuGCGGCUaGGCCGuCA---AGC-CGUGA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 90082 | 0.66 | 0.926133 |
Target: 5'- ---gGCCGAUgUGGC---UCGGCACg -3' miRNA: 3'- uuugCGGCUAgGCCGucaAGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 65986 | 0.66 | 0.926133 |
Target: 5'- cAACGUCGAaCUgGGCGGUgauccCGGCACc -3' miRNA: 3'- uUUGCGGCUaGG-CCGUCAa----GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 104743 | 0.66 | 0.926133 |
Target: 5'- gGAGCGCuCGAUCUcguGGUAGcggUCGGCcCg -3' miRNA: 3'- -UUUGCG-GCUAGG---CCGUCa--AGCCGuGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 101551 | 0.66 | 0.926133 |
Target: 5'- cGAACGCCGuuccgaacgCCGGCGGgagugcCGGC-Cg -3' miRNA: 3'- -UUUGCGGCua-------GGCCGUCaa----GCCGuGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 191659 | 0.66 | 0.909188 |
Target: 5'- --cCGCCGGgggacggcgCCGGCAGcggCGGCGg- -3' miRNA: 3'- uuuGCGGCUa--------GGCCGUCaa-GCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 111317 | 0.66 | 0.909188 |
Target: 5'- gAGACGCCGggCCaGCGGcgCGGgcCGCa -3' miRNA: 3'- -UUUGCGGCuaGGcCGUCaaGCC--GUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 108378 | 0.67 | 0.879201 |
Target: 5'- cGGGCGCCgGAgcggggagcggaggcUCCGGCGG--CGGCGCc -3' miRNA: 3'- -UUUGCGG-CU---------------AGGCCGUCaaGCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 108308 | 0.67 | 0.880603 |
Target: 5'- --cCGuuGcgCCGGCGGUgggucuuggacggCGGCGCa -3' miRNA: 3'- uuuGCggCuaGGCCGUCAa------------GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 55258 | 0.67 | 0.890168 |
Target: 5'- aGGACGCCGAagagCCGGgGGg-CGGCGgUg -3' miRNA: 3'- -UUUGCGGCUa---GGCCgUCaaGCCGUgA- -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 114750 | 0.67 | 0.88338 |
Target: 5'- cGGCGCCGcccgCCGGCgccGGUccUCGGCGg- -3' miRNA: 3'- uUUGCGGCua--GGCCG---UCA--AGCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 136716 | 0.67 | 0.890168 |
Target: 5'- cAGGCGCCGGUcCCGGCGuccaGGCGg- -3' miRNA: 3'- -UUUGCGGCUA-GGCCGUcaagCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 73058 | 0.66 | 0.896735 |
Target: 5'- -cACGCUGAacuUCUGGCAGgaggacgGGCGCa -3' miRNA: 3'- uuUGCGGCU---AGGCCGUCaag----CCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 22719 | 0.66 | 0.896735 |
Target: 5'- cGGCGCCGAgagCCGGCGaacggUCGGUc-- -3' miRNA: 3'- uUUGCGGCUa--GGCCGUca---AGCCGuga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 100600 | 0.66 | 0.903075 |
Target: 5'- -cGCGCCGAUcCCGGgGGUgUUGGUcuACg -3' miRNA: 3'- uuUGCGGCUA-GGCCgUCA-AGCCG--UGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 20748 | 0.66 | 0.903075 |
Target: 5'- -cGCGCUGAUCCGcCAGcucucggaaCGGCGCg -3' miRNA: 3'- uuUGCGGCUAGGCcGUCaa-------GCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 129208 | 0.66 | 0.903075 |
Target: 5'- cGAGCgGCCGA--CGGCGGUggauaGGCGCg -3' miRNA: 3'- -UUUG-CGGCUagGCCGUCAag---CCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 120069 | 0.66 | 0.903075 |
Target: 5'- cGGAgGCCGAcgCGGCGGUggCGGCGa- -3' miRNA: 3'- -UUUgCGGCUagGCCGUCAa-GCCGUga -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 49768 | 0.66 | 0.908587 |
Target: 5'- -cGCGCUcGUCUccccggaGGCGGUUgGGCACg -3' miRNA: 3'- uuUGCGGcUAGG-------CCGUCAAgCCGUGa -5' |
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10706 | 3' | -56.5 | NC_002794.1 | + | 57407 | 0.66 | 0.909188 |
Target: 5'- cGGCGCCcgcguggCCGGCGugcuggUCGGCACg -3' miRNA: 3'- uUUGCGGcua----GGCCGUca----AGCCGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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