Results 21 - 40 of 88 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 129208 | 0.66 | 0.903075 |
Target: 5'- cGAGCgGCCGA--CGGCGGUggauaGGCGCg -3' miRNA: 3'- -UUUG-CGGCUagGCCGUCAag---CCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 120069 | 0.66 | 0.903075 |
Target: 5'- cGGAgGCCGAcgCGGCGGUggCGGCGa- -3' miRNA: 3'- -UUUgCGGCUagGCCGUCAa-GCCGUga -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 22719 | 0.66 | 0.896735 |
Target: 5'- cGGCGCCGAgagCCGGCGaacggUCGGUc-- -3' miRNA: 3'- uUUGCGGCUa--GGCCGUca---AGCCGuga -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 73058 | 0.66 | 0.896735 |
Target: 5'- -cACGCUGAacuUCUGGCAGgaggacgGGCGCa -3' miRNA: 3'- uuUGCGGCU---AGGCCGUCaag----CCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 136716 | 0.67 | 0.890168 |
Target: 5'- cAGGCGCCGGUcCCGGCGuccaGGCGg- -3' miRNA: 3'- -UUUGCGGCUA-GGCCGUcaagCCGUga -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 55258 | 0.67 | 0.890168 |
Target: 5'- aGGACGCCGAagagCCGGgGGg-CGGCGgUg -3' miRNA: 3'- -UUUGCGGCUa---GGCCgUCaaGCCGUgA- -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 114750 | 0.67 | 0.88338 |
Target: 5'- cGGCGCCGcccgCCGGCgccGGUccUCGGCGg- -3' miRNA: 3'- uUUGCGGCua--GGCCG---UCA--AGCCGUga -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 108308 | 0.67 | 0.880603 |
Target: 5'- --cCGuuGcgCCGGCGGUgggucuuggacggCGGCGCa -3' miRNA: 3'- uuuGCggCuaGGCCGUCAa------------GCCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 108378 | 0.67 | 0.879201 |
Target: 5'- cGGGCGCCgGAgcggggagcggaggcUCCGGCGG--CGGCGCc -3' miRNA: 3'- -UUUGCGG-CU---------------AGGCCGUCaaGCCGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 66042 | 0.67 | 0.876373 |
Target: 5'- --uCGUCGggCCGGCAGcggCGGC-CUg -3' miRNA: 3'- uuuGCGGCuaGGCCGUCaa-GCCGuGA- -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 137389 | 0.67 | 0.876373 |
Target: 5'- cGACGCgGGUCCGGUcuGUcCGGCGu- -3' miRNA: 3'- uUUGCGgCUAGGCCGu-CAaGCCGUga -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 126252 | 0.67 | 0.869153 |
Target: 5'- uGGCGCgCGAggUCGGCGGcuggcuggCGGCGCUg -3' miRNA: 3'- uUUGCG-GCUa-GGCCGUCaa------GCCGUGA- -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 29203 | 0.67 | 0.869153 |
Target: 5'- --cCGUCcGUCCGGCGG-UCGGCGg- -3' miRNA: 3'- uuuGCGGcUAGGCCGUCaAGCCGUga -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 87350 | 0.67 | 0.869153 |
Target: 5'- cAGCaGCgGGUCCGGCGGcgagCGGCGu- -3' miRNA: 3'- uUUG-CGgCUAGGCCGUCaa--GCCGUga -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 137601 | 0.67 | 0.869153 |
Target: 5'- ---aGCCGccgCCGGCGGUcgCGGCGg- -3' miRNA: 3'- uuugCGGCua-GGCCGUCAa-GCCGUga -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 137648 | 0.67 | 0.861724 |
Target: 5'- cGGGCGCCGGgccUCCGGCgccgcuGGUgCGGaCGCa -3' miRNA: 3'- -UUUGCGGCU---AGGCCG------UCAaGCC-GUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 145810 | 0.67 | 0.861724 |
Target: 5'- cGACGCCGccgCCGGCGGcgagcCGaGCGCg -3' miRNA: 3'- uUUGCGGCua-GGCCGUCaa---GC-CGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 58866 | 0.67 | 0.854092 |
Target: 5'- --uCGCCGA-CCGGCAGc-CGuGCGCg -3' miRNA: 3'- uuuGCGGCUaGGCCGUCaaGC-CGUGa -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 41251 | 0.68 | 0.846264 |
Target: 5'- --cCGCCGAcgCCGGCGGcccgUCGucGCGCUc -3' miRNA: 3'- uuuGCGGCUa-GGCCGUCa---AGC--CGUGA- -5' |
|||||||
10706 | 3' | -56.5 | NC_002794.1 | + | 112831 | 0.68 | 0.838246 |
Target: 5'- --cCGCCGAguaCGGCuGcucgUCGGCGCg -3' miRNA: 3'- uuuGCGGCUag-GCCGuCa---AGCCGUGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home