Results 21 - 40 of 121 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 181159 | 0.66 | 0.752076 |
Target: 5'- aGCccguCCGCCGcGCCGaCGGcGAacgGCGGAc- -3' miRNA: 3'- -CGu---GGCGGU-CGGC-GCC-CUa--CGCCUuu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 108379 | 0.66 | 0.761279 |
Target: 5'- -gGgCGCCGGa-GCGGGGaGCGGAGg -3' miRNA: 3'- cgUgGCGGUCggCGCCCUaCGCCUUu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 36914 | 0.66 | 0.752076 |
Target: 5'- cGCGgCGCCGGCCcCGcGAccGCGGAGGa -3' miRNA: 3'- -CGUgGCGGUCGGcGCcCUa-CGCCUUU- -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 55806 | 0.66 | 0.752076 |
Target: 5'- cGCAgCGCCGGgCGCGGGcgcGCGc--- -3' miRNA: 3'- -CGUgGCGGUCgGCGCCCua-CGCcuuu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 143702 | 0.66 | 0.752076 |
Target: 5'- cGCGuuGCCcaCCGCGGGccccgGCGGGc- -3' miRNA: 3'- -CGUggCGGucGGCGCCCua---CGCCUuu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 107032 | 0.66 | 0.742774 |
Target: 5'- gGCGCCGCUGGggacccCCGCGucGGAggcgGCGGGc- -3' miRNA: 3'- -CGUGGCGGUC------GGCGC--CCUa---CGCCUuu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 191871 | 0.66 | 0.742774 |
Target: 5'- -gGCCGgCGGCggaGgGGGcgGCGGAGg -3' miRNA: 3'- cgUGGCgGUCGg--CgCCCuaCGCCUUu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 104428 | 0.66 | 0.742774 |
Target: 5'- -gGCCGCCGgcccggacgccGCCGCGGGcgGCccGAGc -3' miRNA: 3'- cgUGGCGGU-----------CGGCGCCCuaCGc-CUUu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 103954 | 0.66 | 0.75115 |
Target: 5'- cCGCuCGCCAGCCGCcGGcgcuucaGAcUGCGGGc- -3' miRNA: 3'- cGUG-GCGGUCGGCG-CC-------CU-ACGCCUuu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 111389 | 0.66 | 0.75115 |
Target: 5'- uGCACCuccgGCCAGCgCuCGGGGUcgagaccguaggcGCGGAGc -3' miRNA: 3'- -CGUGG----CGGUCG-GcGCCCUA-------------CGCCUUu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 108602 | 0.66 | 0.742774 |
Target: 5'- gGCGCgGCCgaccuGGUCGCGGuGGUGUgucGGAAc -3' miRNA: 3'- -CGUGgCGG-----UCGGCGCC-CUACG---CCUUu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 107538 | 0.67 | 0.682449 |
Target: 5'- cGCGgCGCCGGCgGCgacgaccgcgguggGGGAggaggaggagGCGGAGAc -3' miRNA: 3'- -CGUgGCGGUCGgCG--------------CCCUa---------CGCCUUU- -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 32311 | 0.67 | 0.685372 |
Target: 5'- gGC-CgCGCCGGCCGCGGc---CGGAGAc -3' miRNA: 3'- -CGuG-GCGGUCGGCGCCcuacGCCUUU- -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 190735 | 0.67 | 0.685372 |
Target: 5'- cGCAgCGCCcGCCGCcgucucgacggGGGcgGCGGc-- -3' miRNA: 3'- -CGUgGCGGuCGGCG-----------CCCuaCGCCuuu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 72415 | 0.67 | 0.685372 |
Target: 5'- aCACCGCC-GCgGCGgaggaGGAgccgGCGGAGGg -3' miRNA: 3'- cGUGGCGGuCGgCGC-----CCUa---CGCCUUU- -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 96543 | 0.67 | 0.685372 |
Target: 5'- cGCGCCGacgaaCCGGUCGaCGaGGA-GCGGGAGc -3' miRNA: 3'- -CGUGGC-----GGUCGGC-GC-CCUaCGCCUUU- -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 12693 | 0.67 | 0.703791 |
Target: 5'- aGCGCCuguucauGUCGGCCGUGGGcUGCGc--- -3' miRNA: 3'- -CGUGG-------CGGUCGGCGCCCuACGCcuuu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 105870 | 0.67 | 0.695088 |
Target: 5'- aGCGgCGCCgAGgaCGUGGGggGUGGGAGa -3' miRNA: 3'- -CGUgGCGG-UCg-GCGCCCuaCGCCUUU- -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 34863 | 0.67 | 0.703791 |
Target: 5'- gGCGCCGCgGgcGCCGCGGacgccgcGAacGCGGAAc -3' miRNA: 3'- -CGUGGCGgU--CGGCGCC-------CUa-CGCCUUu -5' |
|||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 71299 | 0.67 | 0.685372 |
Target: 5'- -aGCCGCCGGCgCGCucGGGcgGCGa--- -3' miRNA: 3'- cgUGGCGGUCG-GCG--CCCuaCGCcuuu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home