miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 71299 0.67 0.685372
Target:  5'- -aGCCGCCGGCgCGCucGGGcgGCGa--- -3'
miRNA:   3'- cgUGGCGGUCG-GCG--CCCuaCGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 107538 0.67 0.682449
Target:  5'- cGCGgCGCCGGCgGCgacgaccgcgguggGGGAggaggaggagGCGGAGAc -3'
miRNA:   3'- -CGUgGCGGUCGgCG--------------CCCUa---------CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 101823 0.67 0.704755
Target:  5'- cGCGCCGUgcgcgaGGCCauGCGGGAgUGCGaGGAc -3'
miRNA:   3'- -CGUGGCGg-----UCGG--CGCCCU-ACGC-CUUu -5'
10706 5' -60.8 NC_002794.1 + 34863 0.67 0.703791
Target:  5'- gGCGCCGCgGgcGCCGCGGacgccgcGAacGCGGAAc -3'
miRNA:   3'- -CGUGGCGgU--CGGCGCC-------CUa-CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 105870 0.67 0.695088
Target:  5'- aGCGgCGCCgAGgaCGUGGGggGUGGGAGa -3'
miRNA:   3'- -CGUgGCGG-UCg-GCGCCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 12693 0.67 0.703791
Target:  5'- aGCGCCuguucauGUCGGCCGUGGGcUGCGc--- -3'
miRNA:   3'- -CGUGG-------CGGUCGGCGCCCuACGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 96543 0.67 0.685372
Target:  5'- cGCGCCGacgaaCCGGUCGaCGaGGA-GCGGGAGc -3'
miRNA:   3'- -CGUGGC-----GGUCGGC-GC-CCUaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 72415 0.67 0.685372
Target:  5'- aCACCGCC-GCgGCGgaggaGGAgccgGCGGAGGg -3'
miRNA:   3'- cGUGGCGGuCGgCGC-----CCUa---CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 190735 0.67 0.685372
Target:  5'- cGCAgCGCCcGCCGCcgucucgacggGGGcgGCGGc-- -3'
miRNA:   3'- -CGUgGCGGuCGGCG-----------CCCuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 32311 0.67 0.685372
Target:  5'- gGC-CgCGCCGGCCGCGGc---CGGAGAc -3'
miRNA:   3'- -CGuG-GCGGUCGGCGCCcuacGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 179479 0.68 0.61665
Target:  5'- cGCACUcgaccgguuGUCGGCCGUccGGGAUGCuGAAGu -3'
miRNA:   3'- -CGUGG---------CGGUCGGCG--CCCUACGcCUUU- -5'
10706 5' -60.8 NC_002794.1 + 34489 0.68 0.636337
Target:  5'- uGCGCCGCCAGgUGaccaaccaGGGc-GCGGAGGa -3'
miRNA:   3'- -CGUGGCGGUCgGCg-------CCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 154363 0.68 0.61665
Target:  5'- cGCGCgGuCCAgGCCGCGGcGGcgGCGGGc- -3'
miRNA:   3'- -CGUGgC-GGU-CGGCGCC-CUa-CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 49014 0.68 0.636337
Target:  5'- cGCGCCGCggCGGCCGCGGcgucguccGgcGCGGu-- -3'
miRNA:   3'- -CGUGGCG--GUCGGCGCC--------CuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 94482 0.68 0.636337
Target:  5'- gGCGgCGgacgCGGCCGCGGGccgugGCGGGGAu -3'
miRNA:   3'- -CGUgGCg---GUCGGCGCCCua---CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 58064 0.68 0.636337
Target:  5'- gGCcCCGgCGGCgGCGGGAcggGCGGc-- -3'
miRNA:   3'- -CGuGGCgGUCGgCGCCCUa--CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 120712 0.68 0.636337
Target:  5'- gGCGCCGCCGucguucuucGUCGUGGGcacgGCGGu-- -3'
miRNA:   3'- -CGUGGCGGU---------CGGCGCCCua--CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 49395 0.68 0.646179
Target:  5'- cCGCCGCCgucggccacggcGGCCGCGGcGGcgGCGGc-- -3'
miRNA:   3'- cGUGGCGG------------UCGGCGCC-CUa-CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 148797 0.68 0.646179
Target:  5'- cGCACCGUCgccgAGCaCGCGGaGAUcUGGAGAc -3'
miRNA:   3'- -CGUGGCGG----UCG-GCGCC-CUAcGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 12020 0.68 0.606818
Target:  5'- uGCGCCGCCGGCC-CGGGcguccGCGc--- -3'
miRNA:   3'- -CGUGGCGGUCGGcGCCCua---CGCcuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.