miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 148797 0.68 0.646179
Target:  5'- cGCACCGUCgccgAGCaCGCGGaGAUcUGGAGAc -3'
miRNA:   3'- -CGUGGCGG----UCG-GCGCC-CUAcGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 49395 0.68 0.646179
Target:  5'- cCGCCGCCgucggccacggcGGCCGCGGcGGcgGCGGc-- -3'
miRNA:   3'- cGUGGCGG------------UCGGCGCC-CUa-CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 120712 0.68 0.636337
Target:  5'- gGCGCCGCCGucguucuucGUCGUGGGcacgGCGGu-- -3'
miRNA:   3'- -CGUGGCGGU---------CGGCGCCCua--CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 58064 0.68 0.636337
Target:  5'- gGCcCCGgCGGCgGCGGGAcggGCGGc-- -3'
miRNA:   3'- -CGuGGCgGUCGgCGCCCUa--CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 94482 0.68 0.636337
Target:  5'- gGCGgCGgacgCGGCCGCGGGccgugGCGGGGAu -3'
miRNA:   3'- -CGUgGCg---GUCGGCGCCCua---CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 49014 0.68 0.636337
Target:  5'- cGCGCCGCggCGGCCGCGGcgucguccGgcGCGGu-- -3'
miRNA:   3'- -CGUGGCG--GUCGGCGCC--------CuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 105508 0.69 0.538837
Target:  5'- cCGCCGCCGGUCGCGccguccGAaGCGGAc- -3'
miRNA:   3'- cGUGGCGGUCGGCGCc-----CUaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 6592 0.69 0.538837
Target:  5'- cCGCCGCCAuGCuCGCGGGc--CGGAAc -3'
miRNA:   3'- cGUGGCGGU-CG-GCGCCCuacGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 78682 0.69 0.558052
Target:  5'- -gGCCGCCGGCCGCau-GUGCGGc-- -3'
miRNA:   3'- cgUGGCGGUCGGCGcccUACGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 133450 0.69 0.558052
Target:  5'- cGCACCGCUgaucuuGCgGaCGGGuAUGCGGGc- -3'
miRNA:   3'- -CGUGGCGGu-----CGgC-GCCC-UACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 49463 0.69 0.558052
Target:  5'- gGCGCCGCCGugaccggccGCCGCGGGucUGUcGAc- -3'
miRNA:   3'- -CGUGGCGGU---------CGGCGCCCu-ACGcCUuu -5'
10706 5' -60.8 NC_002794.1 + 156407 0.69 0.558052
Target:  5'- gGCGCCG-CGGCCGCGGccacggccgGCGGGu- -3'
miRNA:   3'- -CGUGGCgGUCGGCGCCcua------CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 184571 0.69 0.558052
Target:  5'- cGCGCCGCCgcggcggcggcGGCCacGCGcGGccGCGGGAu -3'
miRNA:   3'- -CGUGGCGG-----------UCGG--CGC-CCuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 94027 0.69 0.567733
Target:  5'- nGUuCCGCCggcgggcccgagAGCgGCGGcGGUGCGGggGc -3'
miRNA:   3'- -CGuGGCGG------------UCGgCGCC-CUACGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 92306 0.69 0.577457
Target:  5'- gGCGggGCUGGgCGCGGGcgGCGGggGc -3'
miRNA:   3'- -CGUggCGGUCgGCGCCCuaCGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 137603 0.69 0.577457
Target:  5'- cCGCCGCCGGCgGuCGcGGcgGCGGu-- -3'
miRNA:   3'- cGUGGCGGUCGgC-GC-CCuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 42667 0.7 0.510458
Target:  5'- gGCGCCGCCGGCa-CGGGGUacGCcGAGAc -3'
miRNA:   3'- -CGUGGCGGUCGgcGCCCUA--CGcCUUU- -5'
10706 5' -60.8 NC_002794.1 + 184452 0.7 0.510458
Target:  5'- cGCGCCGCUgccGcCCGCGGGccGCGcGAAc -3'
miRNA:   3'- -CGUGGCGGu--C-GGCGCCCuaCGC-CUUu -5'
10706 5' -60.8 NC_002794.1 + 182087 0.7 0.519852
Target:  5'- cCACCGCCAGCCagcguucuucGCGGua-GCGGAu- -3'
miRNA:   3'- cGUGGCGGUCGG----------CGCCcuaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 94277 0.7 0.510458
Target:  5'- uGCGCgGCgCGGCCcgaGCGGGggGCGGc-- -3'
miRNA:   3'- -CGUGgCG-GUCGG---CGCCCuaCGCCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.