miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 94277 0.7 0.510458
Target:  5'- uGCGCgGCgCGGCCcgaGCGGGggGCGGc-- -3'
miRNA:   3'- -CGUGgCG-GUCGG---CGCCCuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 42667 0.7 0.510458
Target:  5'- gGCGCCGCCGGCa-CGGGGUacGCcGAGAc -3'
miRNA:   3'- -CGUGGCGGUCGgcGCCCUA--CGcCUUU- -5'
10706 5' -60.8 NC_002794.1 + 184452 0.7 0.510458
Target:  5'- cGCGCCGCUgccGcCCGCGGGccGCGcGAAc -3'
miRNA:   3'- -CGUGGCGGu--C-GGCGCCCuaCGC-CUUu -5'
10706 5' -60.8 NC_002794.1 + 182087 0.7 0.519852
Target:  5'- cCACCGCCAGCCagcguucuucGCGGua-GCGGAu- -3'
miRNA:   3'- cGUGGCGGUCGG----------CGCCcuaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 95819 0.7 0.529313
Target:  5'- aGCGgCGgCGGCCGgGGGAgcgGCGGc-- -3'
miRNA:   3'- -CGUgGCgGUCGGCgCCCUa--CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 115516 0.71 0.446921
Target:  5'- aGguCCGCCuGUCGCaGGAcGCGGAGGa -3'
miRNA:   3'- -CguGGCGGuCGGCGcCCUaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 65759 0.71 0.446044
Target:  5'- cGCGCCGCC-GCCGCccgugguGGGGccgaGCGGAu- -3'
miRNA:   3'- -CGUGGCGGuCGGCG-------CCCUa---CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 185269 0.71 0.438202
Target:  5'- aCGCCGCCGGCCGaguGGGccGcCGGAc- -3'
miRNA:   3'- cGUGGCGGUCGGCg--CCCuaC-GCCUuu -5'
10706 5' -60.8 NC_002794.1 + 94004 0.71 0.438202
Target:  5'- cCGgCGCCGGCgGCGGGccgGCGGGu- -3'
miRNA:   3'- cGUgGCGGUCGgCGCCCua-CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 193056 0.71 0.429581
Target:  5'- aGCGCCcgcaCCGGCUGCGGGccgucGCGGGAc -3'
miRNA:   3'- -CGUGGc---GGUCGGCGCCCua---CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 17665 0.71 0.446921
Target:  5'- cCGCCGCCAccGCCGCcGGccccgGCGGAGAc -3'
miRNA:   3'- cGUGGCGGU--CGGCGcCCua---CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 1892 0.71 0.455735
Target:  5'- gGCAcCCGCCGGCCuuauaCGGGGUcCGGggGc -3'
miRNA:   3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 142209 0.71 0.455735
Target:  5'- aGCGgCGgCGGCaGCGGcGGUGCGGGGAg -3'
miRNA:   3'- -CGUgGCgGUCGgCGCC-CUACGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 1557 0.71 0.455735
Target:  5'- gGCAcCCGCCGGCCuuauaCGGGGUcCGGggGc -3'
miRNA:   3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 94659 0.71 0.464642
Target:  5'- uGUACCGCCGGCUGUGcccGGccuugGCGGAGc -3'
miRNA:   3'- -CGUGGCGGUCGGCGC---CCua---CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 194540 0.71 0.473639
Target:  5'- aGCGCCGCCAGCaCGCccgc-GCGGAAc -3'
miRNA:   3'- -CGUGGCGGUCG-GCGcccuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 53757 0.71 0.473639
Target:  5'- cCGCCGCC-GCUGCcGGcgGCGGGAc -3'
miRNA:   3'- cGUGGCGGuCGGCGcCCuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 107071 0.71 0.473639
Target:  5'- gGCGCCGCCGGCaUGUcGGAgccgacggGCGGggGu -3'
miRNA:   3'- -CGUGGCGGUCG-GCGcCCUa-------CGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 53074 0.72 0.404332
Target:  5'- cGCGCCGCCAGCuCGCGGcac-CGGGc- -3'
miRNA:   3'- -CGUGGCGGUCG-GCGCCcuacGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 52763 0.72 0.38004
Target:  5'- cGCGCCG-CGGCC-CGGGccGCGGGAu -3'
miRNA:   3'- -CGUGGCgGUCGGcGCCCuaCGCCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.