Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 149232 | 0.72 | 0.396126 |
Target: 5'- gGCGCCGCCGccGUCGcCGGGGUcGCGGc-- -3' miRNA: 3'- -CGUGGCGGU--CGGC-GCCCUA-CGCCuuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 53074 | 0.72 | 0.404332 |
Target: 5'- cGCGCCGCCAGCuCGCGGcac-CGGGc- -3' miRNA: 3'- -CGUGGCGGUCG-GCGCCcuacGCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 113167 | 0.72 | 0.412645 |
Target: 5'- aGCGCgCGCgGGCgGCGGcGGUcGCGGAGg -3' miRNA: 3'- -CGUG-GCGgUCGgCGCC-CUA-CGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 1557 | 0.71 | 0.455735 |
Target: 5'- gGCAcCCGCCGGCCuuauaCGGGGUcCGGggGc -3' miRNA: 3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 53757 | 0.71 | 0.473639 |
Target: 5'- cCGCCGCC-GCUGCcGGcgGCGGGAc -3' miRNA: 3'- cGUGGCGGuCGGCGcCCuaCGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 194540 | 0.71 | 0.473639 |
Target: 5'- aGCGCCGCCAGCaCGCccgc-GCGGAAc -3' miRNA: 3'- -CGUGGCGGUCG-GCGcccuaCGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 107071 | 0.71 | 0.473639 |
Target: 5'- gGCGCCGCCGGCaUGUcGGAgccgacggGCGGggGu -3' miRNA: 3'- -CGUGGCGGUCG-GCGcCCUa-------CGCCuuU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 65759 | 0.71 | 0.446044 |
Target: 5'- cGCGCCGCC-GCCGCccgugguGGGGccgaGCGGAu- -3' miRNA: 3'- -CGUGGCGGuCGGCG-------CCCUa---CGCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 115516 | 0.71 | 0.446921 |
Target: 5'- aGguCCGCCuGUCGCaGGAcGCGGAGGa -3' miRNA: 3'- -CguGGCGGuCGGCGcCCUaCGCCUUU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 17665 | 0.71 | 0.446921 |
Target: 5'- cCGCCGCCAccGCCGCcGGccccgGCGGAGAc -3' miRNA: 3'- cGUGGCGGU--CGGCGcCCua---CGCCUUU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 94659 | 0.71 | 0.464642 |
Target: 5'- uGUACCGCCGGCUGUGcccGGccuugGCGGAGc -3' miRNA: 3'- -CGUGGCGGUCGGCGC---CCua---CGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 142209 | 0.71 | 0.455735 |
Target: 5'- aGCGgCGgCGGCaGCGGcGGUGCGGGGAg -3' miRNA: 3'- -CGUgGCgGUCGgCGCC-CUACGCCUUU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 94004 | 0.71 | 0.438202 |
Target: 5'- cCGgCGCCGGCgGCGGGccgGCGGGu- -3' miRNA: 3'- cGUgGCGGUCGgCGCCCua-CGCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 185269 | 0.71 | 0.438202 |
Target: 5'- aCGCCGCCGGCCGaguGGGccGcCGGAc- -3' miRNA: 3'- cGUGGCGGUCGGCg--CCCuaC-GCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 1892 | 0.71 | 0.455735 |
Target: 5'- gGCAcCCGCCGGCCuuauaCGGGGUcCGGggGc -3' miRNA: 3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 193056 | 0.71 | 0.429581 |
Target: 5'- aGCGCCcgcaCCGGCUGCGGGccgucGCGGGAc -3' miRNA: 3'- -CGUGGc---GGUCGGCGCCCua---CGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 2017 | 0.7 | 0.49189 |
Target: 5'- gGCGcCCGCCGGCCuuauaCGGGGUcCGGggGc -3' miRNA: 3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 143278 | 0.7 | 0.482723 |
Target: 5'- cCGgCGCCGGCCGCucGGGGUcggGCGGGu- -3' miRNA: 3'- cGUgGCGGUCGGCG--CCCUA---CGCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 184452 | 0.7 | 0.510458 |
Target: 5'- cGCGCCGCUgccGcCCGCGGGccGCGcGAAc -3' miRNA: 3'- -CGUGGCGGu--C-GGCGCCCuaCGC-CUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 1955 | 0.7 | 0.49189 |
Target: 5'- gGCGcCCGCCGGCCuuauaCGGGGUcCGGggGc -3' miRNA: 3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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