miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 77647 0.68 0.597005
Target:  5'- aCAUCGCCcaccugugcGGcCCGCGGGucUGCGGGGu -3'
miRNA:   3'- cGUGGCGG---------UC-GGCGCCCu-ACGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 143482 0.68 0.605836
Target:  5'- gGCAgacgaugUCGCUGGCCGCGGGGcUGCaGAu- -3'
miRNA:   3'- -CGU-------GGCGGUCGGCGCCCU-ACGcCUuu -5'
10706 5' -60.8 NC_002794.1 + 117374 0.68 0.597005
Target:  5'- cGgGCCGCCugcacGGUCGCGGcGAaGCGGGc- -3'
miRNA:   3'- -CgUGGCGG-----UCGGCGCC-CUaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 66732 0.68 0.606818
Target:  5'- cCACCGCCGGCgGUGGcg-GCGGc-- -3'
miRNA:   3'- cGUGGCGGUCGgCGCCcuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 94482 0.68 0.636337
Target:  5'- gGCGgCGgacgCGGCCGCGGGccgugGCGGGGAu -3'
miRNA:   3'- -CGUgGCg---GUCGGCGCCCua---CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 12020 0.68 0.606818
Target:  5'- uGCGCCGCCGGCC-CGGGcguccGCGc--- -3'
miRNA:   3'- -CGUGGCGGUCGGcGCCCua---CGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 49014 0.68 0.636337
Target:  5'- cGCGCCGCggCGGCCGCGGcgucguccGgcGCGGu-- -3'
miRNA:   3'- -CGUGGCG--GUCGGCGCC--------CuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 154363 0.68 0.61665
Target:  5'- cGCGCgGuCCAgGCCGCGGcGGcgGCGGGc- -3'
miRNA:   3'- -CGUGgC-GGU-CGGCGCC-CUa-CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 120712 0.68 0.636337
Target:  5'- gGCGCCGCCGucguucuucGUCGUGGGcacgGCGGu-- -3'
miRNA:   3'- -CGUGGCGGU---------CGGCGCCCua--CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 34489 0.68 0.636337
Target:  5'- uGCGCCGCCAGgUGaccaaccaGGGc-GCGGAGGa -3'
miRNA:   3'- -CGUGGCGGUCgGCg-------CCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 179479 0.68 0.61665
Target:  5'- cGCACUcgaccgguuGUCGGCCGUccGGGAUGCuGAAGu -3'
miRNA:   3'- -CGUGG---------CGGUCGGCG--CCCUACGcCUUU- -5'
10706 5' -60.8 NC_002794.1 + 71299 0.67 0.685372
Target:  5'- -aGCCGCCGGCgCGCucGGGcgGCGa--- -3'
miRNA:   3'- cgUGGCGGUCG-GCG--CCCuaCGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 189463 0.67 0.685372
Target:  5'- aGCACgCGCCgaaaGGCCGCGGGcgucGUGUGc--- -3'
miRNA:   3'- -CGUG-GCGG----UCGGCGCCC----UACGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 126558 0.67 0.675616
Target:  5'- aCACCGUC-GCCGCGGcGGUGCu---- -3'
miRNA:   3'- cGUGGCGGuCGGCGCC-CUACGccuuu -5'
10706 5' -60.8 NC_002794.1 + 34990 0.67 0.675616
Target:  5'- aCugCGCCGGCUGCGGGcc-CGGc-- -3'
miRNA:   3'- cGugGCGGUCGGCGCCCuacGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 108309 0.67 0.665826
Target:  5'- cGUugCGCCGGCgGUGGGucuuggacgGCGGc-- -3'
miRNA:   3'- -CGugGCGGUCGgCGCCCua-------CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 115951 0.67 0.665826
Target:  5'- cGCGugUCGCCGGggaCCGUGGGGgggaGCGGGAc -3'
miRNA:   3'- -CGU--GGCGGUC---GGCGCCCUa---CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 142167 0.67 0.664846
Target:  5'- aGCACCGgCAGCgucggcagCGCGaGGAgcggcagUGCGGGAn -3'
miRNA:   3'- -CGUGGCgGUCG--------GCGC-CCU-------ACGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 58690 0.67 0.656012
Target:  5'- cUACCGCCAGCUGCucGGGcugGUGCGc--- -3'
miRNA:   3'- cGUGGCGGUCGGCG--CCC---UACGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 107216 0.67 0.656012
Target:  5'- gGCGCCGCCgggcGGCgCGCGacGGggGCGGc-- -3'
miRNA:   3'- -CGUGGCGG----UCG-GCGC--CCuaCGCCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.