miRNA display CGI


Results 81 - 100 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 189463 0.67 0.685372
Target:  5'- aGCACgCGCCgaaaGGCCGCGGGcgucGUGUGc--- -3'
miRNA:   3'- -CGUG-GCGG----UCGGCGCCC----UACGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 32311 0.67 0.685372
Target:  5'- gGC-CgCGCCGGCCGCGGc---CGGAGAc -3'
miRNA:   3'- -CGuG-GCGGUCGGCGCCcuacGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 107216 0.67 0.656012
Target:  5'- gGCGCCGCCgggcGGCgCGCGacGGggGCGGc-- -3'
miRNA:   3'- -CGUGGCGG----UCG-GCGC--CCuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 58690 0.67 0.656012
Target:  5'- cUACCGCCAGCUGCucGGGcugGUGCGc--- -3'
miRNA:   3'- cGUGGCGGUCGGCG--CCC---UACGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 17842 0.67 0.664846
Target:  5'- uGCACCG--AGCCGCuccugacGGaGAUGCGGAc- -3'
miRNA:   3'- -CGUGGCggUCGGCG-------CC-CUACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 142167 0.67 0.664846
Target:  5'- aGCACCGgCAGCgucggcagCGCGaGGAgcggcagUGCGGGAn -3'
miRNA:   3'- -CGUGGCgGUCG--------GCGC-CCU-------ACGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 115951 0.67 0.665826
Target:  5'- cGCGugUCGCCGGggaCCGUGGGGgggaGCGGGAc -3'
miRNA:   3'- -CGU--GGCGGUC---GGCGCCCUa---CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 108309 0.67 0.665826
Target:  5'- cGUugCGCCGGCgGUGGGucuuggacgGCGGc-- -3'
miRNA:   3'- -CGugGCGGUCGgCGCCCua-------CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 34990 0.67 0.675616
Target:  5'- aCugCGCCGGCUGCGGGcc-CGGc-- -3'
miRNA:   3'- cGugGCGGUCGGCGCCCuacGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 126558 0.67 0.675616
Target:  5'- aCACCGUC-GCCGCGGcGGUGCu---- -3'
miRNA:   3'- cGUGGCGGuCGGCGCC-CUACGccuuu -5'
10706 5' -60.8 NC_002794.1 + 191871 0.66 0.742774
Target:  5'- -gGCCGgCGGCggaGgGGGcgGCGGAGg -3'
miRNA:   3'- cgUGGCgGUCGg--CgCCCuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 107032 0.66 0.742774
Target:  5'- gGCGCCGCUGGggacccCCGCGucGGAggcgGCGGGc- -3'
miRNA:   3'- -CGUGGCGGUC------GGCGC--CCUa---CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 180927 0.66 0.718192
Target:  5'- gGCGCCGUCGGaggucggucucgcguCCGCGGccGAcGCGGAc- -3'
miRNA:   3'- -CGUGGCGGUC---------------GGCGCC--CUaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 182551 0.66 0.714365
Target:  5'- uGCGCCG-CGGCCGgcaccgucacCGGGAucuccgUGCGGGc- -3'
miRNA:   3'- -CGUGGCgGUCGGC----------GCCCU------ACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 111756 0.66 0.714365
Target:  5'- gGCGCCGCgCGgcGCCGuCGGG--GCGGGc- -3'
miRNA:   3'- -CGUGGCG-GU--CGGC-GCCCuaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 138420 0.66 0.714365
Target:  5'- -gGCCGCCgacucgucgAGCCGCGGuGGcgGCGGc-- -3'
miRNA:   3'- cgUGGCGG---------UCGGCGCC-CUa-CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 1819 0.66 0.714365
Target:  5'- gGCAcCCGUCGGCCuuauaCGGGGUcCGGggGc -3'
miRNA:   3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 20373 0.66 0.714365
Target:  5'- cCugCGCCGGaucgucgaCGCGGuGcgGCGGGAc -3'
miRNA:   3'- cGugGCGGUCg-------GCGCC-CuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 58366 0.66 0.714365
Target:  5'- gGCGCCGCCcgacuuccaggaGGCgCGCGGGcgccagcUGCuGGAGc -3'
miRNA:   3'- -CGUGGCGG------------UCG-GCGCCCu------ACG-CCUUu -5'
10706 5' -60.8 NC_002794.1 + 104428 0.66 0.742774
Target:  5'- -gGCCGCCGgcccggacgccGCCGCGGGcgGCccGAGc -3'
miRNA:   3'- cgUGGCGGU-----------CGGCGCCCuaCGc-CUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.