miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 107071 0.71 0.473639
Target:  5'- gGCGCCGCCGGCaUGUcGGAgccgacggGCGGggGu -3'
miRNA:   3'- -CGUGGCGGUCG-GCGcCCUa-------CGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 107216 0.67 0.656012
Target:  5'- gGCGCCGCCgggcGGCgCGCGacGGggGCGGc-- -3'
miRNA:   3'- -CGUGGCGG----UCG-GCGC--CCuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 107538 0.67 0.682449
Target:  5'- cGCGgCGCCGGCgGCgacgaccgcgguggGGGAggaggaggagGCGGAGAc -3'
miRNA:   3'- -CGUgGCGGUCGgCG--------------CCCUa---------CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 108309 0.67 0.665826
Target:  5'- cGUugCGCCGGCgGUGGGucuuggacgGCGGc-- -3'
miRNA:   3'- -CGugGCGGUCGgCGCCCua-------CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 108379 0.66 0.761279
Target:  5'- -gGgCGCCGGa-GCGGGGaGCGGAGg -3'
miRNA:   3'- cgUgGCGGUCggCGCCCUaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 108602 0.66 0.742774
Target:  5'- gGCGCgGCCgaccuGGUCGCGGuGGUGUgucGGAAc -3'
miRNA:   3'- -CGUGgCGG-----UCGGCGCC-CUACG---CCUUu -5'
10706 5' -60.8 NC_002794.1 + 110631 0.7 0.482723
Target:  5'- gGCGCCG-CGGCgGCGGGGU-CGGGu- -3'
miRNA:   3'- -CGUGGCgGUCGgCGCCCUAcGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 111254 0.73 0.349206
Target:  5'- aGCACC-UCGGCCgGCaGGAUGCGGAc- -3'
miRNA:   3'- -CGUGGcGGUCGG-CGcCCUACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 111389 0.66 0.75115
Target:  5'- uGCACCuccgGCCAGCgCuCGGGGUcgagaccguaggcGCGGAGc -3'
miRNA:   3'- -CGUGG----CGGUCG-GcGCCCUA-------------CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 111756 0.66 0.714365
Target:  5'- gGCGCCGCgCGgcGCCGuCGGG--GCGGGc- -3'
miRNA:   3'- -CGUGGCG-GU--CGGC-GCCCuaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 112348 0.76 0.244163
Target:  5'- gGCGgCGCCGGCgGCGGG--GCGGGGAg -3'
miRNA:   3'- -CGUgGCGGUCGgCGCCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 112855 0.66 0.730549
Target:  5'- cGCGCCGCagCAGCUGCugcagcgcgcccacGGGAUcgucGUGGAGc -3'
miRNA:   3'- -CGUGGCG--GUCGGCG--------------CCCUA----CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 113167 0.72 0.412645
Target:  5'- aGCGCgCGCgGGCgGCGGcGGUcGCGGAGg -3'
miRNA:   3'- -CGUG-GCGgUCGgCGCC-CUA-CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 114751 0.66 0.761279
Target:  5'- gGCGCCGCCcGCCGgCGccgguccucGGcgGCGaGGAGg -3'
miRNA:   3'- -CGUGGCGGuCGGC-GC---------CCuaCGC-CUUU- -5'
10706 5' -60.8 NC_002794.1 + 115309 0.68 0.646179
Target:  5'- uGCGCCGCCGuccgcacggucGCCGCGGcGUcCGGGc- -3'
miRNA:   3'- -CGUGGCGGU-----------CGGCGCCcUAcGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 115389 0.66 0.723911
Target:  5'- -gACCGCCGGCC-CGuGcUGCGGAc- -3'
miRNA:   3'- cgUGGCGGUCGGcGCcCuACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 115516 0.71 0.446921
Target:  5'- aGguCCGCCuGUCGCaGGAcGCGGAGGa -3'
miRNA:   3'- -CguGGCGGuCGGCGcCCUaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 115951 0.67 0.665826
Target:  5'- cGCGugUCGCCGGggaCCGUGGGGgggaGCGGGAc -3'
miRNA:   3'- -CGU--GGCGGUC---GGCGCCCUa---CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 117374 0.68 0.597005
Target:  5'- cGgGCCGCCugcacGGUCGCGGcGAaGCGGGc- -3'
miRNA:   3'- -CgUGGCGG-----UCGGCGCC-CUaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 120712 0.68 0.636337
Target:  5'- gGCGCCGCCGucguucuucGUCGUGGGcacgGCGGu-- -3'
miRNA:   3'- -CGUGGCGGU---------CGGCGCCCua--CGCCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.