miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 151592 0.78 0.170862
Target:  5'- cGCGCCGCC-GCCGCGGGcccGCGGu-- -3'
miRNA:   3'- -CGUGGCGGuCGGCGCCCua-CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 149684 0.73 0.372163
Target:  5'- cGCGCuCGaCUGGCCGCGGGGgccgccugGCGGGu- -3'
miRNA:   3'- -CGUG-GC-GGUCGGCGCCCUa-------CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 149232 0.72 0.396126
Target:  5'- gGCGCCGCCGccGUCGcCGGGGUcGCGGc-- -3'
miRNA:   3'- -CGUGGCGGU--CGGC-GCCCUA-CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 148797 0.68 0.646179
Target:  5'- cGCACCGUCgccgAGCaCGCGGaGAUcUGGAGAc -3'
miRNA:   3'- -CGUGGCGG----UCG-GCGCC-CUAcGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 146990 0.76 0.244163
Target:  5'- gGCGCCGCCGGCCGaCGucGGcgGCGGc-- -3'
miRNA:   3'- -CGUGGCGGUCGGC-GC--CCuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 143702 0.66 0.752076
Target:  5'- cGCGuuGCCcaCCGCGGGccccgGCGGGc- -3'
miRNA:   3'- -CGUggCGGucGGCGCCCua---CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 143482 0.68 0.605836
Target:  5'- gGCAgacgaugUCGCUGGCCGCGGGGcUGCaGAu- -3'
miRNA:   3'- -CGU-------GGCGGUCGGCGCCCU-ACGcCUuu -5'
10706 5' -60.8 NC_002794.1 + 143278 0.7 0.482723
Target:  5'- cCGgCGCCGGCCGCucGGGGUcggGCGGGu- -3'
miRNA:   3'- cGUgGCGGUCGGCG--CCCUA---CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 142209 0.71 0.455735
Target:  5'- aGCGgCGgCGGCaGCGGcGGUGCGGGGAg -3'
miRNA:   3'- -CGUgGCgGUCGgCGCC-CUACGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 142167 0.67 0.664846
Target:  5'- aGCACCGgCAGCgucggcagCGCGaGGAgcggcagUGCGGGAn -3'
miRNA:   3'- -CGUGGCgGUCG--------GCGC-CCU-------ACGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 142030 0.66 0.761279
Target:  5'- uGCuuCGCCuGUCGCGGGAccguaccgGCGGu-- -3'
miRNA:   3'- -CGugGCGGuCGGCGCCCUa-------CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 140027 0.73 0.372163
Target:  5'- cCGCgGCCc-CCGCGGGcgGCGGGAGa -3'
miRNA:   3'- cGUGgCGGucGGCGCCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 138420 0.66 0.714365
Target:  5'- -gGCCGCCgacucgucgAGCCGCGGuGGcgGCGGc-- -3'
miRNA:   3'- cgUGGCGG---------UCGGCGCC-CUa-CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 137603 0.69 0.577457
Target:  5'- cCGCCGCCGGCgGuCGcGGcgGCGGu-- -3'
miRNA:   3'- cGUGGCGGUCGgC-GC-CCuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 137566 0.8 0.136931
Target:  5'- cGCGCCGCCGucGCCGcCGGGGccggagUGCGGGGAg -3'
miRNA:   3'- -CGUGGCGGU--CGGC-GCCCU------ACGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 133933 0.74 0.299649
Target:  5'- cGCGcCCGuCCAGuuGCGGGGUGacCGGAAc -3'
miRNA:   3'- -CGU-GGC-GGUCggCGCCCUAC--GCCUUu -5'
10706 5' -60.8 NC_002794.1 + 133450 0.69 0.558052
Target:  5'- cGCACCGCUgaucuuGCgGaCGGGuAUGCGGGc- -3'
miRNA:   3'- -CGUGGCGGu-----CGgC-GCCC-UACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 130660 0.78 0.175066
Target:  5'- cCGCCGCCGGCCGCGGGcuccgccGCGGc-- -3'
miRNA:   3'- cGUGGCGGUCGGCGCCCua-----CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 126558 0.67 0.675616
Target:  5'- aCACCGUC-GCCGCGGcGGUGCu---- -3'
miRNA:   3'- cGUGGCGGuCGGCGCC-CUACGccuuu -5'
10706 5' -60.8 NC_002794.1 + 125847 0.76 0.227662
Target:  5'- uGCGCUGCCGGCUggacaaGCGGGccGUGUGGGAGa -3'
miRNA:   3'- -CGUGGCGGUCGG------CGCCC--UACGCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.