miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 107071 0.71 0.473639
Target:  5'- gGCGCCGCCGGCaUGUcGGAgccgacggGCGGggGu -3'
miRNA:   3'- -CGUGGCGGUCG-GCGcCCUa-------CGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 107032 0.66 0.742774
Target:  5'- gGCGCCGCUGGggacccCCGCGucGGAggcgGCGGGc- -3'
miRNA:   3'- -CGUGGCGGUC------GGCGC--CCUa---CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 105870 0.67 0.695088
Target:  5'- aGCGgCGCCgAGgaCGUGGGggGUGGGAGa -3'
miRNA:   3'- -CGUgGCGG-UCg-GCGCCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 105508 0.69 0.538837
Target:  5'- cCGCCGCCGGUCGCGccguccGAaGCGGAc- -3'
miRNA:   3'- cGUGGCGGUCGGCGCc-----CUaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 104546 0.74 0.327276
Target:  5'- aGCugCGCCAGCgucaGCuGGAUGCGGu-- -3'
miRNA:   3'- -CGugGCGGUCGg---CGcCCUACGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 104428 0.66 0.742774
Target:  5'- -gGCCGCCGgcccggacgccGCCGCGGGcgGCccGAGc -3'
miRNA:   3'- cgUGGCGGU-----------CGGCGCCCuaCGc-CUUu -5'
10706 5' -60.8 NC_002794.1 + 103954 0.66 0.75115
Target:  5'- cCGCuCGCCAGCCGCcGGcgcuucaGAcUGCGGGc- -3'
miRNA:   3'- cGUG-GCGGUCGGCG-CC-------CU-ACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 101823 0.67 0.704755
Target:  5'- cGCGCCGUgcgcgaGGCCauGCGGGAgUGCGaGGAc -3'
miRNA:   3'- -CGUGGCGg-----UCGG--CGCCCU-ACGC-CUUu -5'
10706 5' -60.8 NC_002794.1 + 101583 0.72 0.38004
Target:  5'- -gGCCGCCgcGGCCGgGGGG-GCGGGu- -3'
miRNA:   3'- cgUGGCGG--UCGGCgCCCUaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 101273 0.66 0.733383
Target:  5'- cCGgCGCCGGUgGCGGcg-GCGGGGAg -3'
miRNA:   3'- cGUgGCGGUCGgCGCCcuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 99559 0.75 0.267697
Target:  5'- cGCGCgCGCCcuCCGCGGGcgagggggGUGCGGAGGg -3'
miRNA:   3'- -CGUG-GCGGucGGCGCCC--------UACGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 99513 0.66 0.722959
Target:  5'- aGCACCGUCAcguuuuucaacccGUaucugUGCGGGccGCGGAAAc -3'
miRNA:   3'- -CGUGGCGGU-------------CG-----GCGCCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 96543 0.67 0.685372
Target:  5'- cGCGCCGacgaaCCGGUCGaCGaGGA-GCGGGAGc -3'
miRNA:   3'- -CGUGGC-----GGUCGGC-GC-CCUaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 95819 0.7 0.529313
Target:  5'- aGCGgCGgCGGCCGgGGGAgcgGCGGc-- -3'
miRNA:   3'- -CGUgGCgGUCGGCgCCCUa--CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 94659 0.71 0.464642
Target:  5'- uGUACCGCCGGCUGUGcccGGccuugGCGGAGc -3'
miRNA:   3'- -CGUGGCGGUCGGCGC---CCua---CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 94482 0.68 0.636337
Target:  5'- gGCGgCGgacgCGGCCGCGGGccgugGCGGGGAu -3'
miRNA:   3'- -CGUgGCg---GUCGGCGCCCua---CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 94277 0.7 0.510458
Target:  5'- uGCGCgGCgCGGCCcgaGCGGGggGCGGc-- -3'
miRNA:   3'- -CGUGgCG-GUCGG---CGCCCuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 94027 0.69 0.567733
Target:  5'- nGUuCCGCCggcgggcccgagAGCgGCGGcGGUGCGGggGc -3'
miRNA:   3'- -CGuGGCGG------------UCGgCGCC-CUACGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 94004 0.71 0.438202
Target:  5'- cCGgCGCCGGCgGCGGGccgGCGGGu- -3'
miRNA:   3'- cGUgGCGGUCGgCGCCCua-CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 92306 0.69 0.577457
Target:  5'- gGCGggGCUGGgCGCGGGcgGCGGggGc -3'
miRNA:   3'- -CGUggCGGUCgGCGCCCuaCGCCuuU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.