miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 108379 0.66 0.761279
Target:  5'- -gGgCGCCGGa-GCGGGGaGCGGAGg -3'
miRNA:   3'- cgUgGCGGUCggCGCCCUaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 181159 0.66 0.752076
Target:  5'- aGCccguCCGCCGcGCCGaCGGcGAacgGCGGAc- -3'
miRNA:   3'- -CGu---GGCGGU-CGGC-GCC-CUa--CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 142030 0.66 0.761279
Target:  5'- uGCuuCGCCuGUCGCGGGAccguaccgGCGGu-- -3'
miRNA:   3'- -CGugGCGGuCGGCGCCCUa-------CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 192142 0.66 0.761279
Target:  5'- uGCuGCUGCCGG-CGCGGucGcgGCGGAGc -3'
miRNA:   3'- -CG-UGGCGGUCgGCGCC--CuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 195211 0.65 0.766751
Target:  5'- aGCcCCGCCAGCUGCGGcagcagcccgcGCGGc-- -3'
miRNA:   3'- -CGuGGCGGUCGGCGCCcua--------CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 107032 0.66 0.742774
Target:  5'- gGCGCCGCUGGggacccCCGCGucGGAggcgGCGGGc- -3'
miRNA:   3'- -CGUGGCGGUC------GGCGC--CCUa---CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 101273 0.66 0.733383
Target:  5'- cCGgCGCCGGUgGCGGcg-GCGGGGAg -3'
miRNA:   3'- cGUgGCGGUCGgCGCCcuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 1819 0.66 0.714365
Target:  5'- gGCAcCCGUCGGCCuuauaCGGGGUcCGGggGc -3'
miRNA:   3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 138420 0.66 0.714365
Target:  5'- -gGCCGCCgacucgucgAGCCGCGGuGGcgGCGGc-- -3'
miRNA:   3'- cgUGGCGG---------UCGGCGCC-CUa-CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 111756 0.66 0.714365
Target:  5'- gGCGCCGCgCGgcGCCGuCGGG--GCGGGc- -3'
miRNA:   3'- -CGUGGCG-GU--CGGC-GCCCuaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 182551 0.66 0.714365
Target:  5'- uGCGCCG-CGGCCGgcaccgucacCGGGAucuccgUGCGGGc- -3'
miRNA:   3'- -CGUGGCgGUCGGC----------GCCCU------ACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 180927 0.66 0.718192
Target:  5'- gGCGCCGUCGGaggucggucucgcguCCGCGGccGAcGCGGAc- -3'
miRNA:   3'- -CGUGGCGGUC---------------GGCGCC--CUaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 99513 0.66 0.722959
Target:  5'- aGCACCGUCAcguuuuucaacccGUaucugUGCGGGccGCGGAAAc -3'
miRNA:   3'- -CGUGGCGGU-------------CG-----GCGCCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 2266 0.66 0.723911
Target:  5'- gGCgACCGCCGGCCcuuauaCGGGAgcCGGGGc -3'
miRNA:   3'- -CG-UGGCGGUCGGc-----GCCCUacGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 115389 0.66 0.723911
Target:  5'- -gACCGCCGGCC-CGuGcUGCGGAc- -3'
miRNA:   3'- cgUGGCGGUCGGcGCcCuACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 112855 0.66 0.730549
Target:  5'- cGCGCCGCagCAGCUGCugcagcgcgcccacGGGAUcgucGUGGAGc -3'
miRNA:   3'- -CGUGGCG--GUCGGCG--------------CCCUA----CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 125738 0.66 0.723911
Target:  5'- gGCGgagGCgGGCCGCGGGAcgGCGGc-- -3'
miRNA:   3'- -CGUgg-CGgUCGGCGCCCUa-CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 44291 0.66 0.723911
Target:  5'- cGCGcCCGCCGGgC-CGGcGAgGCGGGGAg -3'
miRNA:   3'- -CGU-GGCGGUCgGcGCC-CUaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 69741 0.66 0.733383
Target:  5'- aGCGCCacgGCCGgcgacGCCGCGGGGaugGCGacGAAGa -3'
miRNA:   3'- -CGUGG---CGGU-----CGGCGCCCUa--CGC--CUUU- -5'
10706 5' -60.8 NC_002794.1 + 67562 0.66 0.733383
Target:  5'- cGCGCCGCaccaaAGCCGaCcGGucgGCGGAc- -3'
miRNA:   3'- -CGUGGCGg----UCGGC-GcCCua-CGCCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.