Results 81 - 100 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 126558 | 0.67 | 0.675616 |
Target: 5'- aCACCGUC-GCCGCGGcGGUGCu---- -3' miRNA: 3'- cGUGGCGGuCGGCGCC-CUACGccuuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 34990 | 0.67 | 0.675616 |
Target: 5'- aCugCGCCGGCUGCGGGcc-CGGc-- -3' miRNA: 3'- cGugGCGGUCGGCGCCCuacGCCuuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 108309 | 0.67 | 0.665826 |
Target: 5'- cGUugCGCCGGCgGUGGGucuuggacgGCGGc-- -3' miRNA: 3'- -CGugGCGGUCGgCGCCCua-------CGCCuuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 115951 | 0.67 | 0.665826 |
Target: 5'- cGCGugUCGCCGGggaCCGUGGGGgggaGCGGGAc -3' miRNA: 3'- -CGU--GGCGGUC---GGCGCCCUa---CGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 142167 | 0.67 | 0.664846 |
Target: 5'- aGCACCGgCAGCgucggcagCGCGaGGAgcggcagUGCGGGAn -3' miRNA: 3'- -CGUGGCgGUCG--------GCGC-CCU-------ACGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 17842 | 0.67 | 0.664846 |
Target: 5'- uGCACCG--AGCCGCuccugacGGaGAUGCGGAc- -3' miRNA: 3'- -CGUGGCggUCGGCG-------CC-CUACGCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 58690 | 0.67 | 0.656012 |
Target: 5'- cUACCGCCAGCUGCucGGGcugGUGCGc--- -3' miRNA: 3'- cGUGGCGGUCGGCG--CCC---UACGCcuuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 32311 | 0.67 | 0.685372 |
Target: 5'- gGC-CgCGCCGGCCGCGGc---CGGAGAc -3' miRNA: 3'- -CGuG-GCGGUCGGCGCCcuacGCCUUU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 190735 | 0.67 | 0.685372 |
Target: 5'- cGCAgCGCCcGCCGCcgucucgacggGGGcgGCGGc-- -3' miRNA: 3'- -CGUgGCGGuCGGCG-----------CCCuaCGCCuuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 72415 | 0.67 | 0.685372 |
Target: 5'- aCACCGCC-GCgGCGgaggaGGAgccgGCGGAGGg -3' miRNA: 3'- cGUGGCGGuCGgCGC-----CCUa---CGCCUUU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 111756 | 0.66 | 0.714365 |
Target: 5'- gGCGCCGCgCGgcGCCGuCGGG--GCGGGc- -3' miRNA: 3'- -CGUGGCG-GU--CGGC-GCCCuaCGCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 138420 | 0.66 | 0.714365 |
Target: 5'- -gGCCGCCgacucgucgAGCCGCGGuGGcgGCGGc-- -3' miRNA: 3'- cgUGGCGG---------UCGGCGCC-CUa-CGCCuuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 1819 | 0.66 | 0.714365 |
Target: 5'- gGCAcCCGUCGGCCuuauaCGGGGUcCGGggGc -3' miRNA: 3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 20373 | 0.66 | 0.714365 |
Target: 5'- cCugCGCCGGaucgucgaCGCGGuGcgGCGGGAc -3' miRNA: 3'- cGugGCGGUCg-------GCGCC-CuaCGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 58366 | 0.66 | 0.714365 |
Target: 5'- gGCGCCGCCcgacuuccaggaGGCgCGCGGGcgccagcUGCuGGAGc -3' miRNA: 3'- -CGUGGCGG------------UCG-GCGCCCu------ACG-CCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 101823 | 0.67 | 0.704755 |
Target: 5'- cGCGCCGUgcgcgaGGCCauGCGGGAgUGCGaGGAc -3' miRNA: 3'- -CGUGGCGg-----UCGG--CGCCCU-ACGC-CUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 34863 | 0.67 | 0.703791 |
Target: 5'- gGCGCCGCgGgcGCCGCGGacgccgcGAacGCGGAAc -3' miRNA: 3'- -CGUGGCGgU--CGGCGCC-------CUa-CGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 105870 | 0.67 | 0.695088 |
Target: 5'- aGCGgCGCCgAGgaCGUGGGggGUGGGAGa -3' miRNA: 3'- -CGUgGCGG-UCg-GCGCCCuaCGCCUUU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 12693 | 0.67 | 0.703791 |
Target: 5'- aGCGCCuguucauGUCGGCCGUGGGcUGCGc--- -3' miRNA: 3'- -CGUGG-------CGGUCGGCGCCCuACGCcuuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 96543 | 0.67 | 0.685372 |
Target: 5'- cGCGCCGacgaaCCGGUCGaCGaGGA-GCGGGAGc -3' miRNA: 3'- -CGUGGC-----GGUCGGC-GC-CCUaCGCCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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