Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10706 | 5' | -60.8 | NC_002794.1 | + | 108379 | 0.66 | 0.761279 |
Target: 5'- -gGgCGCCGGa-GCGGGGaGCGGAGg -3' miRNA: 3'- cgUgGCGGUCggCGCCCUaCGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 181159 | 0.66 | 0.752076 |
Target: 5'- aGCccguCCGCCGcGCCGaCGGcGAacgGCGGAc- -3' miRNA: 3'- -CGu---GGCGGU-CGGC-GCC-CUa--CGCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 142030 | 0.66 | 0.761279 |
Target: 5'- uGCuuCGCCuGUCGCGGGAccguaccgGCGGu-- -3' miRNA: 3'- -CGugGCGGuCGGCGCCCUa-------CGCCuuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 192142 | 0.66 | 0.761279 |
Target: 5'- uGCuGCUGCCGG-CGCGGucGcgGCGGAGc -3' miRNA: 3'- -CG-UGGCGGUCgGCGCC--CuaCGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 195211 | 0.65 | 0.766751 |
Target: 5'- aGCcCCGCCAGCUGCGGcagcagcccgcGCGGc-- -3' miRNA: 3'- -CGuGGCGGUCGGCGCCcua--------CGCCuuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 107032 | 0.66 | 0.742774 |
Target: 5'- gGCGCCGCUGGggacccCCGCGucGGAggcgGCGGGc- -3' miRNA: 3'- -CGUGGCGGUC------GGCGC--CCUa---CGCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 101273 | 0.66 | 0.733383 |
Target: 5'- cCGgCGCCGGUgGCGGcg-GCGGGGAg -3' miRNA: 3'- cGUgGCGGUCGgCGCCcuaCGCCUUU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 1819 | 0.66 | 0.714365 |
Target: 5'- gGCAcCCGUCGGCCuuauaCGGGGUcCGGggGc -3' miRNA: 3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 138420 | 0.66 | 0.714365 |
Target: 5'- -gGCCGCCgacucgucgAGCCGCGGuGGcgGCGGc-- -3' miRNA: 3'- cgUGGCGG---------UCGGCGCC-CUa-CGCCuuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 111756 | 0.66 | 0.714365 |
Target: 5'- gGCGCCGCgCGgcGCCGuCGGG--GCGGGc- -3' miRNA: 3'- -CGUGGCG-GU--CGGC-GCCCuaCGCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 182551 | 0.66 | 0.714365 |
Target: 5'- uGCGCCG-CGGCCGgcaccgucacCGGGAucuccgUGCGGGc- -3' miRNA: 3'- -CGUGGCgGUCGGC----------GCCCU------ACGCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 180927 | 0.66 | 0.718192 |
Target: 5'- gGCGCCGUCGGaggucggucucgcguCCGCGGccGAcGCGGAc- -3' miRNA: 3'- -CGUGGCGGUC---------------GGCGCC--CUaCGCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 99513 | 0.66 | 0.722959 |
Target: 5'- aGCACCGUCAcguuuuucaacccGUaucugUGCGGGccGCGGAAAc -3' miRNA: 3'- -CGUGGCGGU-------------CG-----GCGCCCuaCGCCUUU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 2266 | 0.66 | 0.723911 |
Target: 5'- gGCgACCGCCGGCCcuuauaCGGGAgcCGGGGc -3' miRNA: 3'- -CG-UGGCGGUCGGc-----GCCCUacGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 115389 | 0.66 | 0.723911 |
Target: 5'- -gACCGCCGGCC-CGuGcUGCGGAc- -3' miRNA: 3'- cgUGGCGGUCGGcGCcCuACGCCUuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 112855 | 0.66 | 0.730549 |
Target: 5'- cGCGCCGCagCAGCUGCugcagcgcgcccacGGGAUcgucGUGGAGc -3' miRNA: 3'- -CGUGGCG--GUCGGCG--------------CCCUA----CGCCUUu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 125738 | 0.66 | 0.723911 |
Target: 5'- gGCGgagGCgGGCCGCGGGAcgGCGGc-- -3' miRNA: 3'- -CGUgg-CGgUCGGCGCCCUa-CGCCuuu -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 44291 | 0.66 | 0.723911 |
Target: 5'- cGCGcCCGCCGGgC-CGGcGAgGCGGGGAg -3' miRNA: 3'- -CGU-GGCGGUCgGcGCC-CUaCGCCUUU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 69741 | 0.66 | 0.733383 |
Target: 5'- aGCGCCacgGCCGgcgacGCCGCGGGGaugGCGacGAAGa -3' miRNA: 3'- -CGUGG---CGGU-----CGGCGCCCUa--CGC--CUUU- -5' |
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10706 | 5' | -60.8 | NC_002794.1 | + | 67562 | 0.66 | 0.733383 |
Target: 5'- cGCGCCGCaccaaAGCCGaCcGGucgGCGGAc- -3' miRNA: 3'- -CGUGGCGg----UCGGC-GcCCua-CGCCUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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