miRNA display CGI


Results 21 - 40 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 44291 0.66 0.723911
Target:  5'- cGCGcCCGCCGGgC-CGGcGAgGCGGGGAg -3'
miRNA:   3'- -CGU-GGCGGUCgGcGCC-CUaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 115389 0.66 0.723911
Target:  5'- -gACCGCCGGCC-CGuGcUGCGGAc- -3'
miRNA:   3'- cgUGGCGGUCGGcGCcCuACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 2266 0.66 0.723911
Target:  5'- gGCgACCGCCGGCCcuuauaCGGGAgcCGGGGc -3'
miRNA:   3'- -CG-UGGCGGUCGGc-----GCCCUacGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 99513 0.66 0.722959
Target:  5'- aGCACCGUCAcguuuuucaacccGUaucugUGCGGGccGCGGAAAc -3'
miRNA:   3'- -CGUGGCGGU-------------CG-----GCGCCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 180927 0.66 0.718192
Target:  5'- gGCGCCGUCGGaggucggucucgcguCCGCGGccGAcGCGGAc- -3'
miRNA:   3'- -CGUGGCGGUC---------------GGCGCC--CUaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 58366 0.66 0.714365
Target:  5'- gGCGCCGCCcgacuuccaggaGGCgCGCGGGcgccagcUGCuGGAGc -3'
miRNA:   3'- -CGUGGCGG------------UCG-GCGCCCu------ACG-CCUUu -5'
10706 5' -60.8 NC_002794.1 + 20373 0.66 0.714365
Target:  5'- cCugCGCCGGaucgucgaCGCGGuGcgGCGGGAc -3'
miRNA:   3'- cGugGCGGUCg-------GCGCC-CuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 1819 0.66 0.714365
Target:  5'- gGCAcCCGUCGGCCuuauaCGGGGUcCGGggGc -3'
miRNA:   3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 138420 0.66 0.714365
Target:  5'- -gGCCGCCgacucgucgAGCCGCGGuGGcgGCGGc-- -3'
miRNA:   3'- cgUGGCGG---------UCGGCGCC-CUa-CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 111756 0.66 0.714365
Target:  5'- gGCGCCGCgCGgcGCCGuCGGG--GCGGGc- -3'
miRNA:   3'- -CGUGGCG-GU--CGGC-GCCCuaCGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 182551 0.66 0.714365
Target:  5'- uGCGCCG-CGGCCGgcaccgucacCGGGAucuccgUGCGGGc- -3'
miRNA:   3'- -CGUGGCgGUCGGC----------GCCCU------ACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 101823 0.67 0.704755
Target:  5'- cGCGCCGUgcgcgaGGCCauGCGGGAgUGCGaGGAc -3'
miRNA:   3'- -CGUGGCGg-----UCGG--CGCCCU-ACGC-CUUu -5'
10706 5' -60.8 NC_002794.1 + 12693 0.67 0.703791
Target:  5'- aGCGCCuguucauGUCGGCCGUGGGcUGCGc--- -3'
miRNA:   3'- -CGUGG-------CGGUCGGCGCCCuACGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 34863 0.67 0.703791
Target:  5'- gGCGCCGCgGgcGCCGCGGacgccgcGAacGCGGAAc -3'
miRNA:   3'- -CGUGGCGgU--CGGCGCC-------CUa-CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 105870 0.67 0.695088
Target:  5'- aGCGgCGCCgAGgaCGUGGGggGUGGGAGa -3'
miRNA:   3'- -CGUgGCGG-UCg-GCGCCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 96543 0.67 0.685372
Target:  5'- cGCGCCGacgaaCCGGUCGaCGaGGA-GCGGGAGc -3'
miRNA:   3'- -CGUGGC-----GGUCGGC-GC-CCUaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 72415 0.67 0.685372
Target:  5'- aCACCGCC-GCgGCGgaggaGGAgccgGCGGAGGg -3'
miRNA:   3'- cGUGGCGGuCGgCGC-----CCUa---CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 190735 0.67 0.685372
Target:  5'- cGCAgCGCCcGCCGCcgucucgacggGGGcgGCGGc-- -3'
miRNA:   3'- -CGUgGCGGuCGGCG-----------CCCuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 32311 0.67 0.685372
Target:  5'- gGC-CgCGCCGGCCGCGGc---CGGAGAc -3'
miRNA:   3'- -CGuG-GCGGUCGGCGCCcuacGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 71299 0.67 0.685372
Target:  5'- -aGCCGCCGGCgCGCucGGGcgGCGa--- -3'
miRNA:   3'- cgUGGCGGUCG-GCG--CCCuaCGCcuuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.