Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10707 | 3' | -49.9 | NC_002794.1 | + | 127804 | 0.72 | 0.96121 |
Target: 5'- cGAGUCGAcGccgaGCGAgCGCCCGUCgUCGGc -3' miRNA: 3'- cUUUAGUUuC----UGCU-GCGGGCAG-AGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 49562 | 0.72 | 0.957548 |
Target: 5'- aAAGUCGAGGACGaACGaCCgGUCgacCGGa -3' miRNA: 3'- cUUUAGUUUCUGC-UGC-GGgCAGa--GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 22408 | 0.72 | 0.953657 |
Target: 5'- aAAGUCGGuAGACGAUGaCCCaGUgUCGGg -3' miRNA: 3'- cUUUAGUU-UCUGCUGC-GGG-CAgAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 179434 | 0.72 | 0.953657 |
Target: 5'- cGGGcgCGGAGGCGugGaccaCCGcCUCGGu -3' miRNA: 3'- -CUUuaGUUUCUGCugCg---GGCaGAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 123825 | 0.72 | 0.949533 |
Target: 5'- ----gCAGGaGCGGCGCCCGUCgaucCGGa -3' miRNA: 3'- cuuuaGUUUcUGCUGCGGGCAGa---GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 8045 | 0.73 | 0.940569 |
Target: 5'- -----gGAAGACGcCGCaCCGUCUUGGc -3' miRNA: 3'- cuuuagUUUCUGCuGCG-GGCAGAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 50612 | 0.73 | 0.925304 |
Target: 5'- gGGGAUC-GAGACGAgcugcuUGCCCGUC-CGGc -3' miRNA: 3'- -CUUUAGuUUCUGCU------GCGGGCAGaGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 64781 | 0.74 | 0.888212 |
Target: 5'- ----aCGAAGACGACGCCgGUUccgCGGc -3' miRNA: 3'- cuuuaGUUUCUGCUGCGGgCAGa--GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 131563 | 0.75 | 0.873965 |
Target: 5'- -uGGUCGGc-GCGGCGCCCGUCUUGa -3' miRNA: 3'- cuUUAGUUucUGCUGCGGGCAGAGCc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 118030 | 0.75 | 0.866507 |
Target: 5'- uAGAUCAgcuccagcaggcGAG-CGugGCCCGUCUCGcGg -3' miRNA: 3'- cUUUAGU------------UUCuGCugCGGGCAGAGC-C- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 149848 | 0.75 | 0.858833 |
Target: 5'- cGAGGaCGGGGACGAggagcggcCGCCCG-CUCGGg -3' miRNA: 3'- -CUUUaGUUUCUGCU--------GCGGGCaGAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 65798 | 0.75 | 0.850949 |
Target: 5'- cGAGG-CGuuGACGACGUCCGUUUCGa -3' miRNA: 3'- -CUUUaGUuuCUGCUGCGGGCAGAGCc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 131154 | 0.76 | 0.842862 |
Target: 5'- -cGGUCGcacgccAGcACGGCGCCCGUCUCGa -3' miRNA: 3'- cuUUAGUu-----UC-UGCUGCGGGCAGAGCc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 181044 | 0.78 | 0.752557 |
Target: 5'- ---cUCcGAGACGAaGCUCGUCUCGGa -3' miRNA: 3'- cuuuAGuUUCUGCUgCGGGCAGAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 180866 | 0.79 | 0.692579 |
Target: 5'- --cGUCGGAGGCGgcggauccggcGCGCCCGgUCUCGGc -3' miRNA: 3'- cuuUAGUUUCUGC-----------UGCGGGC-AGAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 38058 | 0.88 | 0.263182 |
Target: 5'- cGAcGUCGAGGAucuCGACGUCCGUCUCGGa -3' miRNA: 3'- -CUuUAGUUUCU---GCUGCGGGCAGAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 188004 | 1.11 | 0.012966 |
Target: 5'- cGAAAUCAAAGACGACGCCCGUCUCGGc -3' miRNA: 3'- -CUUUAGUUUCUGCUGCGGGCAGAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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