miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 3' -49.9 NC_002794.1 + 115325 0.66 0.999213
Target:  5'- -cGGUCGcc-GCGGCGUCCGggccgCUCGGc -3'
miRNA:   3'- cuUUAGUuucUGCUGCGGGCa----GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 115830 0.68 0.995455
Target:  5'- uGGAUC---GGCGGgGCCCGgcgggCUCGGg -3'
miRNA:   3'- cUUUAGuuuCUGCUgCGGGCa----GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 118030 0.75 0.866507
Target:  5'- uAGAUCAgcuccagcaggcGAG-CGugGCCCGUCUCGcGg -3'
miRNA:   3'- cUUUAGU------------UUCuGCugCGGGCAGAGC-C- -5'
10707 3' -49.9 NC_002794.1 + 118259 0.66 0.998836
Target:  5'- gGAGGUCGgccGGGGCGGCGgCgCCGgcgUCGGg -3'
miRNA:   3'- -CUUUAGU---UUCUGCUGC-G-GGCag-AGCC- -5'
10707 3' -49.9 NC_002794.1 + 119504 0.67 0.998315
Target:  5'- cGggGUCGucGGCGGCGCggagCCGgccgCGGa -3'
miRNA:   3'- -CuuUAGUuuCUGCUGCG----GGCaga-GCC- -5'
10707 3' -49.9 NC_002794.1 + 121357 0.66 0.99948
Target:  5'- gGAAGuUCGucGACGGCGUCCGagC-CGGc -3'
miRNA:   3'- -CUUU-AGUuuCUGCUGCGGGCa-GaGCC- -5'
10707 3' -49.9 NC_002794.1 + 121907 0.7 0.980887
Target:  5'- --cGUCGAcuGGACGuCGCCCGcCgCGGg -3'
miRNA:   3'- cuuUAGUU--UCUGCuGCGGGCaGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 123177 0.69 0.990772
Target:  5'- ----aCGAGGAgaacgugccCGACgGCCgCGUCUCGGa -3'
miRNA:   3'- cuuuaGUUUCU---------GCUG-CGG-GCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 123825 0.72 0.949533
Target:  5'- ----gCAGGaGCGGCGCCCGUCgaucCGGa -3'
miRNA:   3'- cuuuaGUUUcUGCUGCGGGCAGa---GCC- -5'
10707 3' -49.9 NC_002794.1 + 126688 0.66 0.99948
Target:  5'- cGAAUCGGGGAgggaggGGCGCCgCGgaCUCGGg -3'
miRNA:   3'- cUUUAGUUUCUg-----CUGCGG-GCa-GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 126836 0.7 0.980887
Target:  5'- cGggGUCGGAGaaccgcGCGACGUCUGUCUa-- -3'
miRNA:   3'- -CuuUAGUUUC------UGCUGCGGGCAGAgcc -5'
10707 3' -49.9 NC_002794.1 + 127804 0.72 0.96121
Target:  5'- cGAGUCGAcGccgaGCGAgCGCCCGUCgUCGGc -3'
miRNA:   3'- cUUUAGUUuC----UGCU-GCGGGCAG-AGCC- -5'
10707 3' -49.9 NC_002794.1 + 128275 0.7 0.978668
Target:  5'- cGAGcgCGGAGcCGACGgCCGUCUuCGa -3'
miRNA:   3'- -CUUuaGUUUCuGCUGCgGGCAGA-GCc -5'
10707 3' -49.9 NC_002794.1 + 131154 0.76 0.842862
Target:  5'- -cGGUCGcacgccAGcACGGCGCCCGUCUCGa -3'
miRNA:   3'- cuUUAGUu-----UC-UGCUGCGGGCAGAGCc -5'
10707 3' -49.9 NC_002794.1 + 131563 0.75 0.873965
Target:  5'- -uGGUCGGc-GCGGCGCCCGUCUUGa -3'
miRNA:   3'- cuUUAGUUucUGCUGCGGGCAGAGCc -5'
10707 3' -49.9 NC_002794.1 + 133914 0.69 0.990772
Target:  5'- -cGGUCuacGAGACGgcggccGCGCCCGUCcaguugCGGg -3'
miRNA:   3'- cuUUAGu--UUCUGC------UGCGGGCAGa-----GCC- -5'
10707 3' -49.9 NC_002794.1 + 138116 0.69 0.992965
Target:  5'- -----gGAGGGCGuggugcucguCGCCgGUCUCGGg -3'
miRNA:   3'- cuuuagUUUCUGCu---------GCGGgCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 141372 0.67 0.997989
Target:  5'- cGGAGagAAcGGCGAcCGUCCGUCguUCGGg -3'
miRNA:   3'- -CUUUagUUuCUGCU-GCGGGCAG--AGCC- -5'
10707 3' -49.9 NC_002794.1 + 141899 0.67 0.99761
Target:  5'- --cGUCc-AGGCGACGCgCCGuUCUCGcGg -3'
miRNA:   3'- cuuUAGuuUCUGCUGCG-GGC-AGAGC-C- -5'
10707 3' -49.9 NC_002794.1 + 141937 0.66 0.99904
Target:  5'- cGGAUCcGAcGGCGGCGaCCCGUUggaCGGc -3'
miRNA:   3'- cUUUAGuUU-CUGCUGC-GGGCAGa--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.