Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10707 | 3' | -49.9 | NC_002794.1 | + | 138116 | 0.69 | 0.992965 |
Target: 5'- -----gGAGGGCGuggugcucguCGCCgGUCUCGGg -3' miRNA: 3'- cuuuagUUUCUGCu---------GCGGgCAGAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 133914 | 0.69 | 0.990772 |
Target: 5'- -cGGUCuacGAGACGgcggccGCGCCCGUCcaguugCGGg -3' miRNA: 3'- cuUUAGu--UUCUGC------UGCGGGCAGa-----GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 131563 | 0.75 | 0.873965 |
Target: 5'- -uGGUCGGc-GCGGCGCCCGUCUUGa -3' miRNA: 3'- cuUUAGUUucUGCUGCGGGCAGAGCc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 131154 | 0.76 | 0.842862 |
Target: 5'- -cGGUCGcacgccAGcACGGCGCCCGUCUCGa -3' miRNA: 3'- cuUUAGUu-----UC-UGCUGCGGGCAGAGCc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 128275 | 0.7 | 0.978668 |
Target: 5'- cGAGcgCGGAGcCGACGgCCGUCUuCGa -3' miRNA: 3'- -CUUuaGUUUCuGCUGCgGGCAGA-GCc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 127804 | 0.72 | 0.96121 |
Target: 5'- cGAGUCGAcGccgaGCGAgCGCCCGUCgUCGGc -3' miRNA: 3'- cUUUAGUUuC----UGCU-GCGGGCAG-AGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 126836 | 0.7 | 0.980887 |
Target: 5'- cGggGUCGGAGaaccgcGCGACGUCUGUCUa-- -3' miRNA: 3'- -CuuUAGUUUC------UGCUGCGGGCAGAgcc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 126688 | 0.66 | 0.99948 |
Target: 5'- cGAAUCGGGGAgggaggGGCGCCgCGgaCUCGGg -3' miRNA: 3'- cUUUAGUUUCUg-----CUGCGG-GCa-GAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 123825 | 0.72 | 0.949533 |
Target: 5'- ----gCAGGaGCGGCGCCCGUCgaucCGGa -3' miRNA: 3'- cuuuaGUUUcUGCUGCGGGCAGa---GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 123177 | 0.69 | 0.990772 |
Target: 5'- ----aCGAGGAgaacgugccCGACgGCCgCGUCUCGGa -3' miRNA: 3'- cuuuaGUUUCU---------GCUG-CGG-GCAGAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 121907 | 0.7 | 0.980887 |
Target: 5'- --cGUCGAcuGGACGuCGCCCGcCgCGGg -3' miRNA: 3'- cuuUAGUU--UCUGCuGCGGGCaGaGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 121357 | 0.66 | 0.99948 |
Target: 5'- gGAAGuUCGucGACGGCGUCCGagC-CGGc -3' miRNA: 3'- -CUUU-AGUuuCUGCUGCGGGCa-GaGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 119504 | 0.67 | 0.998315 |
Target: 5'- cGggGUCGucGGCGGCGCggagCCGgccgCGGa -3' miRNA: 3'- -CuuUAGUuuCUGCUGCG----GGCaga-GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 118259 | 0.66 | 0.998836 |
Target: 5'- gGAGGUCGgccGGGGCGGCGgCgCCGgcgUCGGg -3' miRNA: 3'- -CUUUAGU---UUCUGCUGC-G-GGCag-AGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 118030 | 0.75 | 0.866507 |
Target: 5'- uAGAUCAgcuccagcaggcGAG-CGugGCCCGUCUCGcGg -3' miRNA: 3'- cUUUAGU------------UUCuGCugCGGGCAGAGC-C- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 115830 | 0.68 | 0.995455 |
Target: 5'- uGGAUC---GGCGGgGCCCGgcgggCUCGGg -3' miRNA: 3'- cUUUAGuuuCUGCUgCGGGCa----GAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 115325 | 0.66 | 0.999213 |
Target: 5'- -cGGUCGcc-GCGGCGUCCGggccgCUCGGc -3' miRNA: 3'- cuUUAGUuucUGCUGCGGGCa----GAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 115231 | 0.68 | 0.996104 |
Target: 5'- cGGAUCuggcucuuGACGACGuCCaCGUCgUCGGg -3' miRNA: 3'- cUUUAGuuu-----CUGCUGC-GG-GCAG-AGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 112665 | 0.69 | 0.989491 |
Target: 5'- ---cUCGcAGGCGGCGUUCGUCUCc- -3' miRNA: 3'- cuuuAGUuUCUGCUGCGGGCAGAGcc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 110343 | 0.71 | 0.970869 |
Target: 5'- gGggGUCuccgccguGGCGACGCCuCGUCgucgUCGGc -3' miRNA: 3'- -CuuUAGuuu-----CUGCUGCGG-GCAG----AGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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