Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10707 | 3' | -49.9 | NC_002794.1 | + | 49857 | 0.66 | 0.99948 |
Target: 5'- ----gCGucGGCGGCGCCCGcCaccCGGa -3' miRNA: 3'- cuuuaGUuuCUGCUGCGGGCaGa--GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 25938 | 0.66 | 0.99948 |
Target: 5'- ----aCGAcGACGACGUCCGUC-Ca- -3' miRNA: 3'- cuuuaGUUuCUGCUGCGGGCAGaGcc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 57430 | 0.66 | 0.99948 |
Target: 5'- -uGGUCGGc-ACGGCGCCCGUCa--- -3' miRNA: 3'- cuUUAGUUucUGCUGCGGGCAGagcc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 126688 | 0.66 | 0.99948 |
Target: 5'- cGAAUCGGGGAgggaggGGCGCCgCGgaCUCGGg -3' miRNA: 3'- cUUUAGUUUCUg-----CUGCGG-GCa-GAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 121357 | 0.66 | 0.99948 |
Target: 5'- gGAAGuUCGucGACGGCGUCCGagC-CGGc -3' miRNA: 3'- -CUUU-AGUuuCUGCUGCGGGCa-GaGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 141937 | 0.66 | 0.99904 |
Target: 5'- cGGAUCcGAcGGCGGCGaCCCGUUggaCGGc -3' miRNA: 3'- cUUUAGuUU-CUGCUGC-GGGCAGa--GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 118259 | 0.66 | 0.998836 |
Target: 5'- gGAGGUCGgccGGGGCGGCGgCgCCGgcgUCGGg -3' miRNA: 3'- -CUUUAGU---UUCUGCUGC-G-GGCag-AGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 191360 | 0.67 | 0.997127 |
Target: 5'- aGGAGUCGGGGACGggccggacccuccGCGCCCG---CGGc -3' miRNA: 3'- -CUUUAGUUUCUGC-------------UGCGGGCagaGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 145637 | 0.67 | 0.997174 |
Target: 5'- gGAGAUCGGAccCGA-GCUCGUCgUCGGg -3' miRNA: 3'- -CUUUAGUUUcuGCUgCGGGCAG-AGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 141899 | 0.67 | 0.99761 |
Target: 5'- --cGUCc-AGGCGACGCgCCGuUCUCGcGg -3' miRNA: 3'- cuuUAGuuUCUGCUGCG-GGC-AGAGC-C- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 70332 | 0.67 | 0.997989 |
Target: 5'- ----gCGAAGACGccgacggccggGCGCCCG-CUCGu -3' miRNA: 3'- cuuuaGUUUCUGC-----------UGCGGGCaGAGCc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 110209 | 0.67 | 0.997989 |
Target: 5'- aGggGUCGcucAgGACGUCCGUC-CGGa -3' miRNA: 3'- -CuuUAGUuucUgCUGCGGGCAGaGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 141372 | 0.67 | 0.997989 |
Target: 5'- cGGAGagAAcGGCGAcCGUCCGUCguUCGGg -3' miRNA: 3'- -CUUUagUUuCUGCU-GCGGGCAG--AGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 17251 | 0.67 | 0.998315 |
Target: 5'- ---uUCGAcGGCGGCGaCCCGgCUCGu -3' miRNA: 3'- cuuuAGUUuCUGCUGC-GGGCaGAGCc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 2070 | 0.67 | 0.998315 |
Target: 5'- gGAAGUCcGAGACGAcCGCCgGcCUuauaCGGc -3' miRNA: 3'- -CUUUAGuUUCUGCU-GCGGgCaGA----GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 119504 | 0.67 | 0.998315 |
Target: 5'- cGggGUCGucGGCGGCGCggagCCGgccgCGGa -3' miRNA: 3'- -CuuUAGUuuCUGCUGCG----GGCaga-GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 10290 | 0.67 | 0.998596 |
Target: 5'- --cGUCucAGACGAC-CCCGUCggCGa -3' miRNA: 3'- cuuUAGuuUCUGCUGcGGGCAGa-GCc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 89926 | 0.67 | 0.998596 |
Target: 5'- ----cUAGAGGCGcggGCGCCgGcuUCUCGGg -3' miRNA: 3'- cuuuaGUUUCUGC---UGCGGgC--AGAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 157044 | 0.67 | 0.998596 |
Target: 5'- ---uUCAGAGucCGGCGagaCCGUCgCGGa -3' miRNA: 3'- cuuuAGUUUCu-GCUGCg--GGCAGaGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 62538 | 0.67 | 0.998596 |
Target: 5'- ----aCGAAGAgccCGACGCCCaUC-CGGa -3' miRNA: 3'- cuuuaGUUUCU---GCUGCGGGcAGaGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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